Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0520 |
Symbol | |
ID | 8413371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 601397 |
End bp | 603742 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 645022090 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_003179542 |
Protein GI | 257784325 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0839645 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000697847 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGACG AGAGGACCAA AAAAGAGGTT AAGGCACCAG GAGCAGATAA TTACCGTCTG CTTGAGGGCG CCGTGCGCTC ATATTTGCCT GAGGAGGCTC AGACTAAGAT TGCTGCTGCG TATACCTTTG CCGCTGACTA CCACAAAGAC CAGCGCCGCC GTTCCGGCGA GCCCTATATC AACCATCCAG TTGAAGTAGC TCTTATTCTT GCACACGATC TTCACATGGA CGAGGACACC ATCTGCGCTG CTCTTATGCA TGATACCGTA GAAGATACAT CTGCCTCACT CGATGAAATT TCTTCTCGCT TTGGTAAGTC AGTTGCTGAG CTTGTTGACG GCGTTACCAA GCTTACGTCT ATTGAGGTTA GCTCAATGGA CGAGAAGCAA GCACTTAACT TGCGCAAAAT GTTTCTTGCT ATGTCAAAGG ACATCCGTGT TGTTATTATC AAGCTTGCTG ACCGTCTTCA TAATATGCGT ACGCTTGCGG CACTTCCACC GGATCGTCGC CTGTTTAAGG CGCGAGAAAC CATGGATGTG TATGCACCAC TTGCTGATCG CCTAGGTATC TCTTCGGTTA AGTGGGAGCT TGAAGACTTG TCCTTCTTTT GGCTTGAGCC AGAGGAATAC CAGCGTGTTG CTCGTATGGT CTCTGACTCT CGTGCGCAAA GAGAGAATGA TCTCAACAAC GCTAAGAAGA CTTTGACTGA CGAGCTCAAC GCTGCAGGAA TTACTGACTT TCAGATTACG GGTCGTCCTA AGCACCTGTG GTCCATCTAC CAAAAGATGG TCCGTAAGGG CAGGGAGTTC TCCAACATCT ACGATCTTAT CGCCCTGCGC GTTATTACCA AGAACGTAGG CGATTGTTAC TCAGCGCTTG GTGCTATCCA TGCACTTTGG CATCCAATGC CTGGTCGTTT TAAGGACTAC ATTGCAACGC CTAAGGCAAA CCTTTATCAG TCTCTACATA CAACGGTCAT TGGCCCTGAT GGTCGTCCTA TTGAGATTCA GATTAGAACA GCTGAGATGC ATGAAGCATC TGAGTACGGT ATTGCTGCCC ACTGGCTCTA CAAGGAAGAG GGCAATTCAA AGGGCAAGAT GTCCTCTGAG GATAAGCTTA TTGACTCTAC TATCAACTGG ATTCGTCGCA GTCTTGACTG GGCTGTCGAA GACGATATTG ATGATCCTCA TGAGTTCTTG GACAACCTGC GTGTAGACCT CTTTGAGCAT GAGATTTTTG TCTTTACTCC AAAGGGTGAG GTCATGAGCT TGCGTGTTAA CTCGACACCT TTAGACTTTG CCTATGCCGT TCACACTGAG GTAGGTAATC ACTGCGTTGG CGCGCGTGTT AACGGCTCCG TTGTTCCGCT GACGCATACG CTTCAGATGG GCGATCGCAT TGAGATCTTA ACTAACAAGA ACGCCCGTCC TTCTCGCGAC TGGATGACGC TGGTAAAGAC TCCGTCTGCT CGTGCAAAGA TTCGTAAGTA TTTCTCGCAA GAGAACAAGT CTGATGATGC AGAGCGCGGT CGTTCTGAAC TTGCAAAAGA GTTGCGTAAG CATGGCTATG GTATCAGCGC CACGCGCACC ATTAAGGCGC TTGATCAGCT CATTGAACAG TTTGATTATC GCAGCGTAGA TGACCTGTTT GCGGGTATTG GTGCGGGTAA TCAATCTGTC AAACAGGTTG TTAATCGTGT GAGCGAGATT TTGGAAGAGA AGAATCCTGA GATAGTTACT GAGCAAGAGC GCAACGCAGC ACGCCTTCAG GAGAAGAACA AGGCCATTGC AAACGATCAG CCCTTGGTTC GCTCGTACGT TATTTCTCGT ACTGCTAAGG GAAGTCGTCC TAAGAAGTCT AACTGCGGCG TTGTGGTAAA CGGCGATCCA GATTTACTTG TTCATCTTGC ACATTGCTGC AATCCTGTTG CAGGAGACGA TATTGTGGGC TTTATCACAC GTGGCCGCGG TGTTTCAGTT CACCGTGCCA ACTGCCCTAA TGTTAAAGAC CTGTCCAACG ATCCAAAACG TATCATTCCT GTTTCTTGGG ATGCGAGCGG CGCTACTGAA TTTAGAGTTG AGATTGTCGT TGAGGCAACA GACCGCATGG GTCTTCTTAA AGACGTTACG GTTGCTTTGT CTGATGCTGG CGCAAATATT CTTTCTGCTG CTACACAAGT TGGCGAGCAG GGCGTGGTGC GTATGCGTTT TCTTGTTTCA ATCTCCGATA CTAGCTTACT TGACACCTTA TTTGCATTTG TGACTCGCGT GCCTTCTGTC TACGACGCTC GTCGTATTAT GCCAGGTGAA GGCGCTAATC AGATGAGAAG GAGACTTTAT GGCTAA
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Protein sequence | MSDERTKKEV KAPGADNYRL LEGAVRSYLP EEAQTKIAAA YTFAADYHKD QRRRSGEPYI NHPVEVALIL AHDLHMDEDT ICAALMHDTV EDTSASLDEI SSRFGKSVAE LVDGVTKLTS IEVSSMDEKQ ALNLRKMFLA MSKDIRVVII KLADRLHNMR TLAALPPDRR LFKARETMDV YAPLADRLGI SSVKWELEDL SFFWLEPEEY QRVARMVSDS RAQRENDLNN AKKTLTDELN AAGITDFQIT GRPKHLWSIY QKMVRKGREF SNIYDLIALR VITKNVGDCY SALGAIHALW HPMPGRFKDY IATPKANLYQ SLHTTVIGPD GRPIEIQIRT AEMHEASEYG IAAHWLYKEE GNSKGKMSSE DKLIDSTINW IRRSLDWAVE DDIDDPHEFL DNLRVDLFEH EIFVFTPKGE VMSLRVNSTP LDFAYAVHTE VGNHCVGARV NGSVVPLTHT LQMGDRIEIL TNKNARPSRD WMTLVKTPSA RAKIRKYFSQ ENKSDDAERG RSELAKELRK HGYGISATRT IKALDQLIEQ FDYRSVDDLF AGIGAGNQSV KQVVNRVSEI LEEKNPEIVT EQERNAARLQ EKNKAIANDQ PLVRSYVISR TAKGSRPKKS NCGVVVNGDP DLLVHLAHCC NPVAGDDIVG FITRGRGVSV HRANCPNVKD LSNDPKRIIP VSWDASGATE FRVEIVVEAT DRMGLLKDVT VALSDAGANI LSAATQVGEQ GVVRMRFLVS ISDTSLLDTL FAFVTRVPSV YDARRIMPGE GANQMRRRLY G
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