Gene Apar_0520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0520 
Symbol 
ID8413371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp601397 
End bp603742 
Gene Length2346 bp 
Protein Length781 aa 
Translation table11 
GC content48% 
IMG OID645022090 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_003179542 
Protein GI257784325 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0839645 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000697847 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTGACG AGAGGACCAA AAAAGAGGTT AAGGCACCAG GAGCAGATAA TTACCGTCTG 
CTTGAGGGCG CCGTGCGCTC ATATTTGCCT GAGGAGGCTC AGACTAAGAT TGCTGCTGCG
TATACCTTTG CCGCTGACTA CCACAAAGAC CAGCGCCGCC GTTCCGGCGA GCCCTATATC
AACCATCCAG TTGAAGTAGC TCTTATTCTT GCACACGATC TTCACATGGA CGAGGACACC
ATCTGCGCTG CTCTTATGCA TGATACCGTA GAAGATACAT CTGCCTCACT CGATGAAATT
TCTTCTCGCT TTGGTAAGTC AGTTGCTGAG CTTGTTGACG GCGTTACCAA GCTTACGTCT
ATTGAGGTTA GCTCAATGGA CGAGAAGCAA GCACTTAACT TGCGCAAAAT GTTTCTTGCT
ATGTCAAAGG ACATCCGTGT TGTTATTATC AAGCTTGCTG ACCGTCTTCA TAATATGCGT
ACGCTTGCGG CACTTCCACC GGATCGTCGC CTGTTTAAGG CGCGAGAAAC CATGGATGTG
TATGCACCAC TTGCTGATCG CCTAGGTATC TCTTCGGTTA AGTGGGAGCT TGAAGACTTG
TCCTTCTTTT GGCTTGAGCC AGAGGAATAC CAGCGTGTTG CTCGTATGGT CTCTGACTCT
CGTGCGCAAA GAGAGAATGA TCTCAACAAC GCTAAGAAGA CTTTGACTGA CGAGCTCAAC
GCTGCAGGAA TTACTGACTT TCAGATTACG GGTCGTCCTA AGCACCTGTG GTCCATCTAC
CAAAAGATGG TCCGTAAGGG CAGGGAGTTC TCCAACATCT ACGATCTTAT CGCCCTGCGC
GTTATTACCA AGAACGTAGG CGATTGTTAC TCAGCGCTTG GTGCTATCCA TGCACTTTGG
CATCCAATGC CTGGTCGTTT TAAGGACTAC ATTGCAACGC CTAAGGCAAA CCTTTATCAG
TCTCTACATA CAACGGTCAT TGGCCCTGAT GGTCGTCCTA TTGAGATTCA GATTAGAACA
GCTGAGATGC ATGAAGCATC TGAGTACGGT ATTGCTGCCC ACTGGCTCTA CAAGGAAGAG
GGCAATTCAA AGGGCAAGAT GTCCTCTGAG GATAAGCTTA TTGACTCTAC TATCAACTGG
ATTCGTCGCA GTCTTGACTG GGCTGTCGAA GACGATATTG ATGATCCTCA TGAGTTCTTG
GACAACCTGC GTGTAGACCT CTTTGAGCAT GAGATTTTTG TCTTTACTCC AAAGGGTGAG
GTCATGAGCT TGCGTGTTAA CTCGACACCT TTAGACTTTG CCTATGCCGT TCACACTGAG
GTAGGTAATC ACTGCGTTGG CGCGCGTGTT AACGGCTCCG TTGTTCCGCT GACGCATACG
CTTCAGATGG GCGATCGCAT TGAGATCTTA ACTAACAAGA ACGCCCGTCC TTCTCGCGAC
TGGATGACGC TGGTAAAGAC TCCGTCTGCT CGTGCAAAGA TTCGTAAGTA TTTCTCGCAA
GAGAACAAGT CTGATGATGC AGAGCGCGGT CGTTCTGAAC TTGCAAAAGA GTTGCGTAAG
CATGGCTATG GTATCAGCGC CACGCGCACC ATTAAGGCGC TTGATCAGCT CATTGAACAG
TTTGATTATC GCAGCGTAGA TGACCTGTTT GCGGGTATTG GTGCGGGTAA TCAATCTGTC
AAACAGGTTG TTAATCGTGT GAGCGAGATT TTGGAAGAGA AGAATCCTGA GATAGTTACT
GAGCAAGAGC GCAACGCAGC ACGCCTTCAG GAGAAGAACA AGGCCATTGC AAACGATCAG
CCCTTGGTTC GCTCGTACGT TATTTCTCGT ACTGCTAAGG GAAGTCGTCC TAAGAAGTCT
AACTGCGGCG TTGTGGTAAA CGGCGATCCA GATTTACTTG TTCATCTTGC ACATTGCTGC
AATCCTGTTG CAGGAGACGA TATTGTGGGC TTTATCACAC GTGGCCGCGG TGTTTCAGTT
CACCGTGCCA ACTGCCCTAA TGTTAAAGAC CTGTCCAACG ATCCAAAACG TATCATTCCT
GTTTCTTGGG ATGCGAGCGG CGCTACTGAA TTTAGAGTTG AGATTGTCGT TGAGGCAACA
GACCGCATGG GTCTTCTTAA AGACGTTACG GTTGCTTTGT CTGATGCTGG CGCAAATATT
CTTTCTGCTG CTACACAAGT TGGCGAGCAG GGCGTGGTGC GTATGCGTTT TCTTGTTTCA
ATCTCCGATA CTAGCTTACT TGACACCTTA TTTGCATTTG TGACTCGCGT GCCTTCTGTC
TACGACGCTC GTCGTATTAT GCCAGGTGAA GGCGCTAATC AGATGAGAAG GAGACTTTAT
GGCTAA
 
Protein sequence
MSDERTKKEV KAPGADNYRL LEGAVRSYLP EEAQTKIAAA YTFAADYHKD QRRRSGEPYI 
NHPVEVALIL AHDLHMDEDT ICAALMHDTV EDTSASLDEI SSRFGKSVAE LVDGVTKLTS
IEVSSMDEKQ ALNLRKMFLA MSKDIRVVII KLADRLHNMR TLAALPPDRR LFKARETMDV
YAPLADRLGI SSVKWELEDL SFFWLEPEEY QRVARMVSDS RAQRENDLNN AKKTLTDELN
AAGITDFQIT GRPKHLWSIY QKMVRKGREF SNIYDLIALR VITKNVGDCY SALGAIHALW
HPMPGRFKDY IATPKANLYQ SLHTTVIGPD GRPIEIQIRT AEMHEASEYG IAAHWLYKEE
GNSKGKMSSE DKLIDSTINW IRRSLDWAVE DDIDDPHEFL DNLRVDLFEH EIFVFTPKGE
VMSLRVNSTP LDFAYAVHTE VGNHCVGARV NGSVVPLTHT LQMGDRIEIL TNKNARPSRD
WMTLVKTPSA RAKIRKYFSQ ENKSDDAERG RSELAKELRK HGYGISATRT IKALDQLIEQ
FDYRSVDDLF AGIGAGNQSV KQVVNRVSEI LEEKNPEIVT EQERNAARLQ EKNKAIANDQ
PLVRSYVISR TAKGSRPKKS NCGVVVNGDP DLLVHLAHCC NPVAGDDIVG FITRGRGVSV
HRANCPNVKD LSNDPKRIIP VSWDASGATE FRVEIVVEAT DRMGLLKDVT VALSDAGANI
LSAATQVGEQ GVVRMRFLVS ISDTSLLDTL FAFVTRVPSV YDARRIMPGE GANQMRRRLY
G