| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0486 |
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| Symbol | |
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| ID | 8413335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 555994 |
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| End bp | 557463 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022054 |
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| Product | UDP-N-acetylmuramate/alanine ligase |
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| Protein accession | YP_003179508 |
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| Protein GI | 257784291 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00092134 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTGGT ATGTCCAAGA CTTAAACGAT AACAATATTT GGAAAGGCTC TCTTATGGCA
GATTCCATGG GCGAGAAGAA CATCTCGCGT GCACATTTTA TTGGAATTGG TGGCGCAGGT
ATGAGCGGAA TTGCGCTTGT CCTGCACGAG CGCGGCTGCA CGGTTACCGG CTCCGATTTG
AAGAGCTCGC ATTATGTTAG AGAGCTTGAA GACGCAGGTA TTCAGGTAAG CATTGGACAC
ACCGCAACCA CTATTGACAC TGTGATGCCT GATGTCATTG TTACCTCTAC TGCAATTCCA
GAGACAAACC CAGAGGTCAT TCGCGCACGT GAGCTTTCCA TTCCTATTTG GCCTCGTGCT
AAGATGCTCT CGTATTTATC ACGTGGCCGC AAGACTATCG CAGTTGCTGG AACTCATGGC
AAGACCACTA CATCCTCTAT GATTGCTACT ATGCTGGATA AGCTTGGTGC CGATCCATCG
TTTTTGATTG GCGGCGTTGT TGAGGGCTAT GACACCAATG GTAAAAATGG TAACGGTCAG
TACTTTGTCT GCGAAGCTGA CGAGTCTGAC GGTTCGTTTA TGTTCCTCAA CCCTAGCGTG
GTAGTTATTA CCAATATTGA GGCAGACCAT CTTGACCACT ACGGTTCTCT TGAGAATATC
GAGAATACCT TCTGCGAGTT CATGAGTTTG CTTGATAAGG AAGAAACCGT TGTTATTAAC
GGTGATAACC CTCATTACGT CGAACTTGCT CAGTCAACTG GTAGACACGT GGTCACCTAT
GGCTTTGATC CAAGCTGCGA TTTTGTTTGC AAGCAGGAGG AGAGAAAAGC TGGTATTGAG
AATCCGCTGA CCATCAAGAC TCCTTCTGGT CAGACCATTT CTGTGGTGCT TCCTGCTAAC
CCTGGTAAGC ACAATGTTGC TAACGCAACC GCTGCTATTG CTGTTGCCGA TACTCTTAAC
TTTGATCTTG AGGAAGCCGC CGCGGCGCTT TCGCAGTTCA AGGGTGCTCG ACGCCGTTTT
ACGCACGTGG GCGATATCAA CGGCATCACC GTTGTAGACG ATTACGGCCA CCATCCAACT
GAGATTGCAG CAACCATGTC TGCAGCTCTT CCTCTTGGCT TCAAGCGCGT TGTTGTGGTC
TTCCAGCCAC ACCGATACAG CAGAACACAA GACTTGGCAG ATTCGTTTAC ACACGCGTTT
GACGGCATTG ACGTTTTACG AGTCATGGAT GTTTTCTCCG CAGGTGAACT GCCTATTCCA
GGCGTCTCTG GCAAGACAGT TTCTTCAAGG GTCCAAGCTG CTAATAGTGT CCCTGACGTG
CGCTATATTC CTTCTCGCCG TGATCTTATC GCAGACCTTC TTGAAACGGT TCATCCAGGA
GACCTGTTGA TTACTCAGGG TGCAGGTGAC GTTACTCAGA TTGGTCCAAT GCTTATCCGT
GCGCTCAAAG AACGCCTTCA GAACAACTAG
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| Protein sequence | MSWYVQDLND NNIWKGSLMA DSMGEKNISR AHFIGIGGAG MSGIALVLHE RGCTVTGSDL
KSSHYVRELE DAGIQVSIGH TATTIDTVMP DVIVTSTAIP ETNPEVIRAR ELSIPIWPRA
KMLSYLSRGR KTIAVAGTHG KTTTSSMIAT MLDKLGADPS FLIGGVVEGY DTNGKNGNGQ
YFVCEADESD GSFMFLNPSV VVITNIEADH LDHYGSLENI ENTFCEFMSL LDKEETVVIN
GDNPHYVELA QSTGRHVVTY GFDPSCDFVC KQEERKAGIE NPLTIKTPSG QTISVVLPAN
PGKHNVANAT AAIAVADTLN FDLEEAAAAL SQFKGARRRF THVGDINGIT VVDDYGHHPT
EIAATMSAAL PLGFKRVVVV FQPHRYSRTQ DLADSFTHAF DGIDVLRVMD VFSAGELPIP
GVSGKTVSSR VQAANSVPDV RYIPSRRDLI ADLLETVHPG DLLITQGAGD VTQIGPMLIR
ALKERLQNN
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