Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0476 |
Symbol | |
ID | 8413325 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 544328 |
End bp | 545236 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 645022044 |
Product | tyrosine recombinase XerD |
Protein accession | YP_003179498 |
Protein GI | 257784281 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTCG CTCAAGCGCG TACAGAATAT ATAGCGTACG TTGCTGTTGA GCGAGGTCTT TCTGTAAATA CGCTTGATGC TTATACCAGA GATTTAGAGG GCTATTTGTT CTGGTTGAGC GGCAAAAAAA TTACTTCACC CAATCAGGTG ACTCGATCCG ACGTAGAAGA GTACATTGGT TCTCTCAGAG ATTTAGGTAT GGCTCCAGCT TCAGTTGAGC GTCATACTGC AGCAATTAGG AATTTTCACA AGTTTATGGC TGTTGAGCAA ATTTGTGAGT CTTCGCCAGC TGAAGATTTA CCTACTACAG CAAGAATTCA AAGGCTTCCT GACGTTATTT CTCAAGAGAA GGCAGAAGAA CTTCTTGATC AACCGTTTCC TAATTCGCCT CTAGGTATTC GCGATAAAGC AATACTTGAG TTGTTGTATG GATGTGGACT TCGCGTGTCT GAGCTTTGTG ATCTTGAAGT ACGTGGAGTC CTTTTAGAAG ATGAACTCTT ACGTGTTTTT GGAAAGGGCT CCAAAGAGCG CGTAGTTCCC GTATTGGGCT CTGCATATCG TGCGCTTAAA ACATATCTCT TTGAAGCTCG CTCTTTATTA CTTAAGCATG GACAAGTGTC TGAGGTCTTT GTAAACGCTC GAGGTGGACG TATTTCTCGC CAGTCGGTTC ATAAATTGGT GGCAAATTAC GGCAGGGTAG TGGGAATTGA AGGCTTACAT CCTCATACAC TGCGTCATAG TTTTGCTACA CACCTTTTAG AAGGCGGAGC TGATCTTCGC TCGGTTCAGG AGCTTTTGGG GCATGTAGAT ATTTCAACTA CGCAGCTTTA TACGCACGTA GATAGGTCTC ACATTAGAGA TGTGTATCTT GAAGCTCATC CAAGAGCTCA TGTCCATGCG GATAAATAA
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Protein sequence | MDLAQARTEY IAYVAVERGL SVNTLDAYTR DLEGYLFWLS GKKITSPNQV TRSDVEEYIG SLRDLGMAPA SVERHTAAIR NFHKFMAVEQ ICESSPAEDL PTTARIQRLP DVISQEKAEE LLDQPFPNSP LGIRDKAILE LLYGCGLRVS ELCDLEVRGV LLEDELLRVF GKGSKERVVP VLGSAYRALK TYLFEARSLL LKHGQVSEVF VNARGGRISR QSVHKLVANY GRVVGIEGLH PHTLRHSFAT HLLEGGADLR SVQELLGHVD ISTTQLYTHV DRSHIRDVYL EAHPRAHVHA DK
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