| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0439 |
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| Symbol | |
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| ID | 8413288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 506490 |
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| End bp | 509093 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022007 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_003179461 |
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| Protein GI | 257784244 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR00003] copper ion binding protein
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGA AAGTTTTTGA TGTACAAGGA ATGACGTGTG CAAGTTGTTC TGCGCACGTA
GAGAAAGCAG CTAACTCTGT TTCTGGCGTC TCTGAGGCTC GTGTTAATTT GCTTAAGAAC
TCGATGGAAG TTGATTACGA CGGTAACCCA GACACCCTTA AGCAGATTTC TGACGCAGTA
AGTAAAGCAG GCTATGAGGC AACGCCTCGT AGTGACAAAA AGGATTCTGC TGCAGCTATT
AAGGCAGATG CTACCGATGC TTCAGAAAGG GCAGTAAAGC AAAAGAGGGT TGAGCTCATT
TCCTCAATGG CCTTTGCAAT TCCACTGTTC TATCTTGCCA TGGGTGAGAT GATGGGAGCA
CCTGTTCCAC CTGCTGTTTC TGGTATGAAT GGCATGATGA ACTTGGCTCT TACAGAGCTT
TTGCTCTGCA TTCCTATTCT GTTTATTTGT CGTCACTATT TTATTGGCGG ATTCCGCTCA
TTGTTGCACG GTGCACCTAA TATGGACTCA CTTATTGCGC TGGGCTCAGC GGCGTCGTTT
GCCTACAGCG TTGTCAGCCT GTATCAGATG GCAAACGCTT TTGTTGCAGG AGACGTGACT
GCAGCTCACC ATGCAATGCA CGGTATGTAC TTTGAGTCCG CTGGTTTGAT TCTTGCTCTG
ATTACCCTGG GCAAGTTCTT TGAGGCTCGC GCAAAAGGTC ATACTACTGG TGCAATTAAT
GCGCTCATGA ATCTTGCTCC AAAGACGGCT ATTCTCGTCA AAGACGGTGT TGAGCAGGAA
GTTCCTGCAG AGACAGTTGT GGTGGGAGAT ATGCTTGTTG TAAGGGCGGG ACAGTCAATT
CCTGTTGATG GCCAAGTCAT TGAGGGAGAA GGATCTGTCG ATGAGTCCGC TATTACCGGA
GAGCCAGTTC CTGTAAGTAA GACTGTTGGT GACTTCGTGA CAGGCGCTAC GGTGTCTACT
GGTGGCTGGT TTAAGATGCG CGCCACTGCC GTTGGTGATG ATACAACGCT TGCAGGTATT
ATTCGCTTGG TTGATGAGGC AACAAGTTCC AAAGCACCTA TCGAGCGTCT TGCTGACAGC
ATCGCCGGAG TCTTTGTCCC TGTTGTCATT GGAATTGCAC TGGTGACGTT TGTAGCATGG
TTTGGCTTTG TGGCACCGGG TGACTTTGCA GTTGCCCTGT CGCACGCCGT TTCTGTTTTG
GTCATCTCTT GCCCTTGTGC ACTTGGCCTT GCAACTCCTA CCGCTATTAT GGTGGGCACT
GGTCTGGGGG CTTCAAATGG CATTTTAGTG AAGTCCGCTG AGGCACTTGA GGGAGCGGTA
CGAGCAACCG TGGTTGTTCT TGATAAGACG GGAACGCTTA CTGAGGGCAA GCCAAGTGTA
ACTGACGTAC TTTGTGCAGG TAGCGTTTCT AAGGATCAGC TGCTTGAGTA TGCATACGCG
CTTGAGCAAA AGAGCGAGCA CCCACTTGCA CAGGCAATTG TTACGTATGC TCAAGAGAAG
CTTGGGAAGT CTGAAGCTGG CTCACTTGAT GTCCAAGAGT TCTCACAGGT TGCTGGCGGT
GGTCTCACGG CAAAGGTTGG CGAGAAACAC CTTGTAGCAG GTAATGCTCG CCTTATGGAG
CAGGAGGACA TCAACACACA AGAGCTGATT TCCCAAGCTC AGCAGCTGGC TGAGCAGGCA
AAGACACCAC TGTACTTTGC ACTTGAGGGT AAGCTTCTTG GCGTCATTGC TGTGGCTGAT
AAGGTAAAGC AGACCAGTGC GTCCACCATT GATCGTCTTC GCGCTATGGG CGTTAAGTCT
GTCATGCTCA CCGGCGATCA GGCAACAACA GCAAACGTCA TTGGTAAAGA ACTTGGCGTT
GACCAGGTCA TCTCTGATGT GTTACCAAGT CAAAAAGAGT CCTACATCAG GCAATTCCAG
GATGCTGGAG AAAATGTTGT TATGGTTGGC GATGGCATCA ATGATGCCCC AGCACTTGCG
CGAGCAAATG TAGGAATTGC AATTGGTGCA GGTACTGATG TTGCTATTGA ATCCGCTGAC
ATTGTCTTGA TGAAGTCTGA TCCAGCTGAT GTCGCAACCT CAATTGAGCT CTCTCGTGCC
ACAATGACTA ACATTAAAGA GAATCTGTTC TGGGCACTGT TCTATAACAC CATTTGTATC
CCTGTTGCTA TGGGTCTGTT GTATCCATTT GGTATTTCGC TGAACCCTAT GATTGGTGCA
GCCGCCATGG GCTTCTCGTC AGTCTTTGTT GTATGCAATG CGCTGCGTTT GCGTACCTGG
AAGCCAAAGA ACGCCAGCTC AGTAACTCAC CAAGACGCTC ATGACACAAA AGCAGTCATT
GACGTTCAAT CTAAGTCCAC AAACGACACA TCCGTGTCAC AGAAGGAGGA ATCTTATATG
AAGAAGAAAC TAAACGTAGA GGGTATGTCC TGCCAGCACT GTGTTGCACA TGTCACCCAT
GCCCTTGAGG CTGTCGAGGG TGTCTCTAAG GCAACTGTTT CACTTGACGA GAAGAGCGCA
GTAGTTGAGC TGTCTTCTGA TGTCCCTGAT AGTGCATTGG TTGACGCTGT TGTTCAGGCA
GGATACGAGG CTACTATTGC CTAA
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| Protein sequence | MNQKVFDVQG MTCASCSAHV EKAANSVSGV SEARVNLLKN SMEVDYDGNP DTLKQISDAV
SKAGYEATPR SDKKDSAAAI KADATDASER AVKQKRVELI SSMAFAIPLF YLAMGEMMGA
PVPPAVSGMN GMMNLALTEL LLCIPILFIC RHYFIGGFRS LLHGAPNMDS LIALGSAASF
AYSVVSLYQM ANAFVAGDVT AAHHAMHGMY FESAGLILAL ITLGKFFEAR AKGHTTGAIN
ALMNLAPKTA ILVKDGVEQE VPAETVVVGD MLVVRAGQSI PVDGQVIEGE GSVDESAITG
EPVPVSKTVG DFVTGATVST GGWFKMRATA VGDDTTLAGI IRLVDEATSS KAPIERLADS
IAGVFVPVVI GIALVTFVAW FGFVAPGDFA VALSHAVSVL VISCPCALGL ATPTAIMVGT
GLGASNGILV KSAEALEGAV RATVVVLDKT GTLTEGKPSV TDVLCAGSVS KDQLLEYAYA
LEQKSEHPLA QAIVTYAQEK LGKSEAGSLD VQEFSQVAGG GLTAKVGEKH LVAGNARLME
QEDINTQELI SQAQQLAEQA KTPLYFALEG KLLGVIAVAD KVKQTSASTI DRLRAMGVKS
VMLTGDQATT ANVIGKELGV DQVISDVLPS QKESYIRQFQ DAGENVVMVG DGINDAPALA
RANVGIAIGA GTDVAIESAD IVLMKSDPAD VATSIELSRA TMTNIKENLF WALFYNTICI
PVAMGLLYPF GISLNPMIGA AAMGFSSVFV VCNALRLRTW KPKNASSVTH QDAHDTKAVI
DVQSKSTNDT SVSQKEESYM KKKLNVEGMS CQHCVAHVTH ALEAVEGVSK ATVSLDEKSA
VVELSSDVPD SALVDAVVQA GYEATIA
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