| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0432 |
|---|
| Symbol | |
|---|
| ID | 8413281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 499757 |
|---|
| End bp | 500431 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 645022000 |
|---|
| Product | putative two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_003179454 |
|---|
| Protein GI | 257784237 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000490664 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCACA AGAATATTCT TCTTGTATCT GCAACGACAC GCTTACATGA ACGTATGCGT
GAACTTTCGC ATGTCATTGA TGTTTCTATT GCTCTTGCAA ATGTAGCTTC ATTTGCGCAG
GCTACAGTTT CTGGTCATAC TTTTGATCTG ATTATTCTTG ATCAAAAAGA TCTTTCTCAA
GATGTTGTTA GTACCGTTGA GAATTATTCC GCGCAAAATG GTGGAATTGC TCGACTATTT
GTTGCTGACC TTGATAATCT TTCTAAATTT GTTCTACCTG TTCAAGGTAA GAGTGATTTT
ATTTTGTCTA CTGCAACTAT CCAGGAGTTT AGTCTAAGGT GTTCGCTGCT TTTGTGGCCA
GGTACTGAGA GCACTTCTAG AGATTTGGTT ATTGTAGACA ATATAAAGAT TAATTTGGCA
ACGTATCAAG TTTACATTGA TGAATCTCCA GTTGATCTTA CTTATATGGA GTATCTGCTA
CTGTCATTTT TGGCAACTCA TCCATCTCGT GCGTACTCGC GTGAGGCACT TTTACAGCGC
GTTTGGGGCT TTGAGTATTG CGGTGGTACC AGAACGGTTG ACGTTCACGT GAGACGCGTT
CGCTCAAAGA TTGGTCCTCA GGCAGCCGCT CATTTGGAGA CAGTGCGAGG CGTGGGTTAT
CTTTTCAGAG CATAA
|
|---|
| Protein sequence | MHHKNILLVS ATTRLHERMR ELSHVIDVSI ALANVASFAQ ATVSGHTFDL IILDQKDLSQ
DVVSTVENYS AQNGGIARLF VADLDNLSKF VLPVQGKSDF ILSTATIQEF SLRCSLLLWP
GTESTSRDLV IVDNIKINLA TYQVYIDESP VDLTYMEYLL LSFLATHPSR AYSREALLQR
VWGFEYCGGT RTVDVHVRRV RSKIGPQAAA HLETVRGVGY LFRA
|
|---|
| |