Gene Apar_0402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0402 
Symbol 
ID8413251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp464120 
End bp464887 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content49% 
IMG OID645021970 
ProductFeS assembly ATPase SufC 
Protein accessionYP_003179424 
Protein GI257784207 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0396] ABC-type transport system involved in Fe-S cluster assembly, ATPase component 
TIGRFAM ID[TIGR01978] FeS assembly ATPase SufC 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.98388e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACTG AGCTACTCCG TGTAAACGGA ATTTCCGCAG GTACCGAGGA GAAATCCATC 
CTGCATTCAA TTGATTTGAG CATTGGTGAT GGCCAGGCTC ATGTTCTGAT GGGACCTAAC
GGCGCAGGTA AATCGACACT TGGCCGTGTC ATTATGGGTG ACCCTACCTA TAAGATTACA
GATGGTTCCC TTATCTTTAA CGGCGAAGAT GTAACTGAAC TTGCTGCAGA TAAGCGCTCC
CTTGCAGGCA TCTTCCTCTC CTATCAGGCA CCTGTTGAGG TTCCTGGTGT TCCTCTTTAT
TCATTCCTGC GTACCATTAC TCAGATGCGC CCCGAGCTTA AGATGACCGC TCGTCAGTTC
CGTCAGCGCG TTGGTCAAAT TTCTGATCAG CTTGAGCTTG ACCAGGGCTT CTTGATGCGT
GAACTTAACG TTGGCTTCTC TGGTGGCGAG AAGAAAAAGG TTGAGATGCT CCAGCTTCTA
TTGCTTCAGC CTAAACTTGC CATTCTCGAC GAGACTGACT CTGGTCTGGA TGTTGACGCA
CTATCCGTTG TTTCAAAAGG TATCCAGGCA TACCGTGAAA CCTGCGACGG ATCGCTGCTC
ATCATTACTC ACAACACTCG CATTCTTGAG CGCCTTGAGA TTGACCGCAC TCACGTTATG
GTTAAGGGTC ACCTGGTAGC TGACGGTCCC GCGGATCTCA TCAACCAAAT TGATCACGAG
GGCTTTGAGC ATTTTGAGAA CCAAACAGAT GAGGGTGGTG CTAACTAG
 
Protein sequence
MATELLRVNG ISAGTEEKSI LHSIDLSIGD GQAHVLMGPN GAGKSTLGRV IMGDPTYKIT 
DGSLIFNGED VTELAADKRS LAGIFLSYQA PVEVPGVPLY SFLRTITQMR PELKMTARQF
RQRVGQISDQ LELDQGFLMR ELNVGFSGGE KKKVEMLQLL LLQPKLAILD ETDSGLDVDA
LSVVSKGIQA YRETCDGSLL IITHNTRILE RLEIDRTHVM VKGHLVADGP ADLINQIDHE
GFEHFENQTD EGGAN