| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0399 |
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| Symbol | |
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| ID | 8413248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 460274 |
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| End bp | 461563 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645021967 |
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| Product | cysteine desulfurase, SufS subfamily |
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| Protein accession | YP_003179421 |
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| Protein GI | 257784204 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CGGAAGTTGC TCAGATTACC GATAACCCTT ACAAAGCAGA TTTTCCAATT
CTGGCAGCAA ATCCCAAGGT AGCTTACTTG GACAGTGCCG CCACTTCTCA GCGTCCACGC
GTAGTCATTG AGGCACAGTC ACGCTTCTAT GAGACCATGA ACGCAAATGC TTTGCGCGGA
TTGTACCGTT GGAGCGTGGA TGCAACCGCA GCTATCGAGG ACGCTCGCGC TTCGATTGCA
AAGTTTATTG GTGCTGTCGA TAAAAACGAC AAGCCAGAAA GTCAGCAGAT TATCTTTACG
CGCAACACTT CTGAGGCACT TAATCTAGTT GCTTCAAGCC TTGGTCGCTA TGCGCTCAAA
CCAGGCGATG ACGTGGTCAT TTCCATCATG GAACACCACT CAAACATCAT TCCTTGGCAG
CAAATTTGCA AGGCTACCGG TGCTAACCTG GTGTATCTAC GCATGAACTC GCAGTATCAA
ATTACGCCCG AAGAAATTGC ATCAAAGATT ACCGAGCGCG CAAAAATTGT ATCTGTCACA
CACGTCTCCA ACGTGCTGGG AACTCGCAAT GACATCAAAG CCATTGCTAA GCGTACTCAT
GCTATGGGTG CCTACATGGT TGTTGATGCT GCTCAATCTG CACCTCACAT CCTTGTTAAC
GTGCATGATC TTGACTGTGA TTTGTTGGCT TTCTCAGCGC ATAAGATGTG CGGACCTATG
GGCATTGGTG TGCTTTGGGG TCGTGCCGAG CTGCTCAACG CTATGCCACC ATTTCTTACC
GGTGGCGAGA TGATTGATTC CGTCACCGAG ACCGGCGCTG TTTGGGCCCC TGTACCCGAG
AAGTTTGAGG CTGGTACACA GGATGCTGCA GGTATCTACG CTACCGGCGC CGCTATCAAA
TACCTCAACG GCTTGGATAT GGCAAAGATT GAGAAGCGAG AAGAACTTCT CGCCAGGTAC
TTGGTACAGC AACTATGCAC GCTGGACTTT GTTGACATTG TTGGCTCTAA GCTGGGACAA
AATCACGTGG GCGCTGTGGC ATTTAACGTA CGCGGCGTTC ATCCACACGA CGTCTCAAGC
ATTCTTGACA TGAATAATGT TTGCATTCGC GCTGGTCATC ACTGTGCTGA GCCGCTTCTG
ATTGAACTGC ATGAGTCCAG CACATGCCGC GCATCCGTTG CATTCTACAA CGATAAACAC
GACATTGATC AGCTTATCGA GGGTCTTAAC CAGGTTTGGA AGATCTTTGG CAGTGCGGTC
AACACTAAGC AAAACAAGGA GCTGAAATAA
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| Protein sequence | MTDTEVAQIT DNPYKADFPI LAANPKVAYL DSAATSQRPR VVIEAQSRFY ETMNANALRG
LYRWSVDATA AIEDARASIA KFIGAVDKND KPESQQIIFT RNTSEALNLV ASSLGRYALK
PGDDVVISIM EHHSNIIPWQ QICKATGANL VYLRMNSQYQ ITPEEIASKI TERAKIVSVT
HVSNVLGTRN DIKAIAKRTH AMGAYMVVDA AQSAPHILVN VHDLDCDLLA FSAHKMCGPM
GIGVLWGRAE LLNAMPPFLT GGEMIDSVTE TGAVWAPVPE KFEAGTQDAA GIYATGAAIK
YLNGLDMAKI EKREELLARY LVQQLCTLDF VDIVGSKLGQ NHVGAVAFNV RGVHPHDVSS
ILDMNNVCIR AGHHCAEPLL IELHESSTCR ASVAFYNDKH DIDQLIEGLN QVWKIFGSAV
NTKQNKELK
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