| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0318 |
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| Symbol | |
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| ID | 8413166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 364294 |
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| End bp | 365592 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645021885 |
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| Product | putative transcriptional regulator, GntR family |
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| Protein accession | YP_003179340 |
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| Protein GI | 257784123 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.024163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGACA GCAGAATCTC GTTTGATCAA TGGGGTGATC TGTATGCAGA TCGCGTTCAA
ACCATGCGAA AGAGCGAAGT ACGAGATTTG TTTGCGGCTC TGTCTCGTCC AGGCGTTATT
GCGCTGTCTG GTGGCCTGCC GGACATTTCT TCGCTGCCGC TTGATCAGGT TGCAGAGTGC
GCTCGACGCT GCGTTGCTGT TGAGGGACTC AGGTCTCTTC AGTACGGTAA CTCTGATGGC
CGTATTGAGT GCAGAAAGAC CATCTGCAAG ATTTTAGCTG TTCAGGGTAT TGAAGCTGAC
CCTGATGAGA TGATTTTGAC TTCTGGTTCT CAGCAGGCGC TTGATTTCTT GGGTCGTGTT
TTTCTTAATC CGGGTGACGA TATTATCTGT GAGGGTCCAA GTTATCTTGG TGCATTCCAG
GCATTTTCTG CGTATGAGCC TTCCGTTCAT ACTATTGATA TGGACGAAGA GGGCATCAGA
ACTGATTTGC TTGAGGCAAA GCTTAAAGAG CTTGCAAGTC AAGGTAGAAA GCCTAAGTTT
ATCTACGTTA TTCCTAACTT TAATAATCCC GCTGGTATCA CCATGTCTAT GCCAAGGCGC
TTGCGCCTTC TTGAGTTGGC CCACCAGTAC AATATTCCTG TTGTCGAAGA TGATCCGTAT
GGTCTTATTC GTTTTGAGGG AGAAGATTTG ATACGTTTGA AGTCGCTTGA TTCAAACGTT
ATTTACCTAG GGACTACTTC AAAGATTTTT GCCCCTGGTC TGCGTCTAGC ATGGATGGTT
GCACCTCGTC ACTTCCTCGA GCGCATTAAT CTTGCTAAGT CTGGTTCTGA CCTGTGTACC
AGCCCCTTTA ATATGATCCT TGCTGAGCAC TACTTTAATG AGGTTGATTG GCAAGCAGCA
CTTGAGGTTT CCAAGTCTCG CTATAAAGAG AGAAAAGATG CCATGCTGGC AGCTCTTGAG
GAGTTCTTTC CCCAAGATGT TACCTGGACT AAGCCTGAGG GCGGTCTGTT CCTGTGGGTA
ACCTTCCCGC CATACCTTAA CACTGAGCAG CTGCTTCCTC GTGCCATTGA GGAAGGAGTT
GCCTTTGTAC CTGGCGTTTA TTGCTATCCT GACCAGCGTA TTAGCTCAAG TATGCGTCTG
TGTTACTCAT TTGAAACTCC GGAACGCATT CGTGAGGCAA TCCGTAGGTT GTCTTTGTGC
GTCCAAGATC GTATGGCGTT GTATCGTGCA TTCTTGGAGG CAGGAGCTCT GCCCGAGTCT
TCTCGTTCCG AATCTTATTC TTCTGCAAGG GAGTGTTAA
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| Protein sequence | MDDSRISFDQ WGDLYADRVQ TMRKSEVRDL FAALSRPGVI ALSGGLPDIS SLPLDQVAEC
ARRCVAVEGL RSLQYGNSDG RIECRKTICK ILAVQGIEAD PDEMILTSGS QQALDFLGRV
FLNPGDDIIC EGPSYLGAFQ AFSAYEPSVH TIDMDEEGIR TDLLEAKLKE LASQGRKPKF
IYVIPNFNNP AGITMSMPRR LRLLELAHQY NIPVVEDDPY GLIRFEGEDL IRLKSLDSNV
IYLGTTSKIF APGLRLAWMV APRHFLERIN LAKSGSDLCT SPFNMILAEH YFNEVDWQAA
LEVSKSRYKE RKDAMLAALE EFFPQDVTWT KPEGGLFLWV TFPPYLNTEQ LLPRAIEEGV
AFVPGVYCYP DQRISSSMRL CYSFETPERI REAIRRLSLC VQDRMALYRA FLEAGALPES
SRSESYSSAR EC
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