Gene Apar_0283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0283 
Symbol 
ID8413131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp324104 
End bp324856 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content49% 
IMG OID645021850 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003179305 
Protein GI257784088 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.06623e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTCG ATTTTACAGG CAAATTGGTT CTGGTTACAG GCGGAAGCGC TGGCATTGGC 
GCTGAAATCT CCAAGGGTAT TGTTGCTGGA GGTGGACATG TAATCGTTTG CTCTCGCCAT
GAGGACACTG GCCGTAAGTT TGTTGAAGAA CTTGGCGAGG GTAACTATTT CTACCCAATG
GACATTTCAG ATGCAGAGGG TGTTAAGAAG ACTGTTGCTC AGATTCTTGA GGAGCGCGGA
GACGTTAACG TTCTTATCAA CTGTGCTGGT CGCATCAGCT CCGTTCCTTT TGCTGAGGTA
GATGACGAGG AGTGGAATAA GACCATCAAC ACCAATCTCA CTGGTACTTA CAACGTGACT
CACGCTCTCT GGCAGCACTT CATTAAGCGT GGCGGCGCAC GTATCGTCAA TGTTTCTTCC
GTTGCCGGCA AAATTGGTGG CGGCCTCCTT GGTACCGTTG CGTACGCATC TTCCAAGGCT
GGCATGAATG GCTTTACCAA GGCTATTGCT AAAGAGGGTG GCAAGTACGG CATTTCTTGT
AATGCTGTTT GCCCATCTTT TACCATTACA GATATGACCA CTGCACTTTC CAATGATGAG
GAGAAGTACA AGAAGGTTGT AGGTATTATT CCTCTTGGTC GTCCTGCTCA GGCATCTGAG
CCTGCACAGA TGGTACTGTT CTTTGCTTCT GATGCTGCTA GCTTTGTCAA CGGTGAGGTT
GGCGACTGCG ACGGCGGCAT TGTTATGGAC TAG
 
Protein sequence
MTFDFTGKLV LVTGGSAGIG AEISKGIVAG GGHVIVCSRH EDTGRKFVEE LGEGNYFYPM 
DISDAEGVKK TVAQILEERG DVNVLINCAG RISSVPFAEV DDEEWNKTIN TNLTGTYNVT
HALWQHFIKR GGARIVNVSS VAGKIGGGLL GTVAYASSKA GMNGFTKAIA KEGGKYGISC
NAVCPSFTIT DMTTALSNDE EKYKKVVGII PLGRPAQASE PAQMVLFFAS DAASFVNGEV
GDCDGGIVMD