Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0240 |
Symbol | |
ID | 8413088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 282264 |
End bp | 283646 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 645021808 |
Product | peptidase |
Protein accession | YP_003179263 |
Protein GI | 257784046 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR03320] M20/DapE family protein YgeY [TIGR03526] putative selenium metabolism hydrolase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000787577 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.24947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGACT TGGATTACGG CGCAATTAAG GATGCAGCAA ACAAGTATTC AAAAGATATG ACCGCGTTTC TGCGCGCAAT GATTTCACAC CCTAGTGAGT CCTCAGAAGA GGGCGAGGTT GTCGCATGCA TTAAAGCTGA GATGGAGAAG CTTGGCTTTG ATGAGGTAAA AGTTGACGGC CTTGGCAACG TTATGGGCTT TATGGGCACT GGCGATAAAA TCATCGCAAT CGACGGTCAC ATTGATACCG TTGGTATTGG TAATCGTGAC AACTGGGATT TTGATCCTTA TGAGGGCTTT GAGGACGATC AGCTCATTGG TGGTCGTGGT GGCTCTGACC AGGAAGGCGG CGTCTGCTCA GGCGTATATG CTGCAAAGAT TATGAAGGAT ATGAACCTTA TTCCTGAGGG CTACAAGGTT ATGGTTGTTG GTACTGTCCA GGAAGAGGAC TGCGACGGTA TGTGCTGGCA GTACATCTAC AATGTTGACA AGATTAAGCC AGAGTTTGTA ATCTCAACCG AGCCTACTGA TGGTGGTATT TATCGCGGTC ACCGTGGCCG TATGGAGATC CGTGTTGACG TCAAGGGCGT TTCTTGCCAC GGTTCAGCTC CTGAGCGTGG TGACAACGCA ATTTATAAGA TGGCTGACAT CATTAATGAC GTTCGTGCAC TTAACAATAA TGGTGCTGAT GAATCCACTG CTATTCGCGG CCTTGTTAAG ATGCTTGATC CTAAGTACAA CCCTGATCAC TATGAGGATG CTCGCTTCCT CGGCCGTGGT ACCTGCACCG TTTCTCAGAT TTACTTCACA AGCCCTTCTC GCTGCGCTGT TGCAGACTCT TGTGCAATTT CCATTGACCG TCGTATGACC GCTGGTGAGA CCTATAAGAG CTGCCTCAAA GAGATTGAGG AGCTTCCTTC CGTCAAAAAG TATGGCGACG ACGTCAAGGT CTCCATGTAC ATGTATGACC GTCCTTCTTG GACTGGCGAG GTTTATGAGA CTGAGTCTTA CTTCCCAACA TGGATCAACA AAGAGTCCGC TCCACACGTT AAGGCACTTG TTGATGCTCA CAAGGCACTC TTTGGTGATA AGCGCATTGG TTGCGAGAAG TCCATGGCAA CTCGTGAAGG TCGTCCTCTA TGCGATAAGT GGACCTTCTC TACAAATTGC GTTTCTATCC AGGGTCGTTA TGGTATTCCT TGCGTTGGCT TTGGACCAGG TGCTGAGTCT CAGGCACATG CTCCAAATGA GATTACCTTC AAGCAGGATC TTCCTACTTG TGCAGCACTG TATGTTGCAG CTCTCAACCT GTATGACGCT TCTGCAGTAA CTGATGATGC AACTGAATTC CGTGCAAGTC TTACCGATAA CAACATTAAG TAA
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Protein sequence | MKDLDYGAIK DAANKYSKDM TAFLRAMISH PSESSEEGEV VACIKAEMEK LGFDEVKVDG LGNVMGFMGT GDKIIAIDGH IDTVGIGNRD NWDFDPYEGF EDDQLIGGRG GSDQEGGVCS GVYAAKIMKD MNLIPEGYKV MVVGTVQEED CDGMCWQYIY NVDKIKPEFV ISTEPTDGGI YRGHRGRMEI RVDVKGVSCH GSAPERGDNA IYKMADIIND VRALNNNGAD ESTAIRGLVK MLDPKYNPDH YEDARFLGRG TCTVSQIYFT SPSRCAVADS CAISIDRRMT AGETYKSCLK EIEELPSVKK YGDDVKVSMY MYDRPSWTGE VYETESYFPT WINKESAPHV KALVDAHKAL FGDKRIGCEK SMATREGRPL CDKWTFSTNC VSIQGRYGIP CVGFGPGAES QAHAPNEITF KQDLPTCAAL YVAALNLYDA SAVTDDATEF RASLTDNNIK
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