Gene Apar_0120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0120 
Symbol 
ID8412964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp134833 
End bp135429 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content46% 
IMG OID645021688 
Producttranscriptional regulator, BadM/Rrf2 family 
Protein accessionYP_003179147 
Protein GI257783930 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000213431 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.090725 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATTT CACGCAAAAC TGACTATGCA ATTCGTATGC TTTCTTCGCT GGTGAGAAAC 
CCTAAGAAGC TTCTTTCTGT TCGTGATGCC GCGGAAGAAA ACGATATTCC GTACTCCTTT
GCTCGCTCAA TTCAGCATGA CCTGGTTATC GCTGGTGTAA TTGTAAGTAC GCGTGGTGCT
CGCGGTGGTA TGATGCTTGC CATAGATCCT ACTCAGGTGA GCGTTCTTGA CATTGTTGAG
GCAGTTCAGG GACCTGTTTT TATTTCTAAC TGCGAGTGGG CAGGTCCTAA TAATGAGCCA
TGTCCTCGCC ACAATTCTTG TTACTTTGGC CCCCTTTGGT GCAGTGCTGA GAAAACCTTG
CGTAATTTCT TTGCGTCTGT GACGCTGCAT CAAGTTGTTG TAGAGGGTCT TATGCCAGAG
ATGGTGGGTG AATTCCAGCT GGTGAAGAAC GAGAATGCTC AGCGTAACGA GCAAATTATT
CAAAACGCTG CCGATGCTAT TGAGGCTGAG ATAACCGCTG GTACGTTTGA TAATCTGCTT
GACGGCGAAG TTGTTTCTGC AGAGAAAAAG CCTTATGAGT TTAATAGAGC ATGGTAA
 
Protein sequence
MEISRKTDYA IRMLSSLVRN PKKLLSVRDA AEENDIPYSF ARSIQHDLVI AGVIVSTRGA 
RGGMMLAIDP TQVSVLDIVE AVQGPVFISN CEWAGPNNEP CPRHNSCYFG PLWCSAEKTL
RNFFASVTLH QVVVEGLMPE MVGEFQLVKN ENAQRNEQII QNAADAIEAE ITAGTFDNLL
DGEVVSAEKK PYEFNRAW