Gene Apar_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0109 
Symbol 
ID8412952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp123777 
End bp124589 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content47% 
IMG OID645021676 
ProductPHP domain protein 
Protein accessionYP_003179136 
Protein GI257783919 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1387] Histidinol phosphatase and related hydrolases of the PHP family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.165533 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTA CTTGCGATGT TCATACTCAC AGCCTGTACT CGAGGCATGC CTATTCAACC 
GTTGAGGAGA ACGTCCGCGT GGCCGCTGAG CGTGGCTTTG AGCTGCTTGG AGTCACTGAT
CACTTTTCGT CCATGTTGTA CGACCAGCAG ACCATCAAGA ATTTCCAGTT CTTTATGAAC
ACTGCAATTT GGCCAGAAAC ATGGCACGGT GTAAGACTTC TTCATGGTAC TGAGGCTGAT
ATTGTTGACC TTGAGGGCAA TCTGTTTGCC TACGACATTA CGTTTGATCA GGGTATTAAT
GGTGACAAAC TTCGCCAACC TCATATTCTT GGCGAGCACA TCCTGGCAAC CTGTGATTAC
GTTGTTGCAA GTATTCACAG CAAGCAATGG GCAGCTGGTG CCTCACAGAA ACAAATTACT
CAGATGTATG TAAATGCGCT GGATAATCCA CATGTTTTGA TTCTTGGTCA CCTTGGCCGT
AGTGGTTTAG ATTTTGATAT TCCAGCGCTT GTTCGTGAAT GTCGTGATCG CGGTAAGCTT
ATCGAGATGA ACGAAGCCAC ACATGACGAG GGCCAACGTG AGGTTGCTAT TAAGCGTTGT
CGCGTGATTG CAGAGACTTG CGCGGAGCTG GGATGCAAGA TTTCCTTTGG CTCAGATGCT
CACATTGCAA CTCGTATTGC TGATGCACAC TCTGTCATTA AGCAGCTAGA AGAAATTGAC
TTCCCTGAGG AACTTATGGC TTGTCGCGAT GCTCAGACGT TTTTGGACAC CATTGCTAAT
GCAAAGATTC CAGCCTCTAA GCAGGGATAT TAA
 
Protein sequence
MRITCDVHTH SLYSRHAYST VEENVRVAAE RGFELLGVTD HFSSMLYDQQ TIKNFQFFMN 
TAIWPETWHG VRLLHGTEAD IVDLEGNLFA YDITFDQGIN GDKLRQPHIL GEHILATCDY
VVASIHSKQW AAGASQKQIT QMYVNALDNP HVLILGHLGR SGLDFDIPAL VRECRDRGKL
IEMNEATHDE GQREVAIKRC RVIAETCAEL GCKISFGSDA HIATRIADAH SVIKQLEEID
FPEELMACRD AQTFLDTIAN AKIPASKQGY