| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0106 |
|---|
| Symbol | |
|---|
| ID | 8412949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 119701 |
|---|
| End bp | 121170 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 645021673 |
|---|
| Product | tRNA(Ile)-lysidine synthetase |
|---|
| Protein accession | YP_003179133 |
|---|
| Protein GI | 257783916 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control |
|---|
| TIGRFAM ID | [TIGR02432] tRNA(Ile)-lysidine synthetase, N-terminal domain
[TIGR02433] tRNA(Ile)-lysidine synthetase, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.31319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGC TCCATATGGC AGCAACGGAG TCGCTTGACC TTGGTGATGG CTTGGGTCTT
GCGCACGTTG CAAAAGAGCG TCTGCATGTT CTGCATGTAA ATCATCTGCT TCGTGAAGAT
GATGCAGATG CTGACCAGCA CTTTGTTCAA GAAACTTGCG ATTCACTGGA CATTCCTTGT
ACCGTGCTGC GCGCGGACGT GGCCAAGCTT GCGCGGGAAC GTGATGGCAA CGTGGAAGAA
ATTGGTCGTC GGGTGCGGTA TGACGCTGCG CGAGAGCTCG CTCAAAAACT TTGTGCCGAA
CAGGGAGTTT CTCGCCAGAA GGCAAAGATT TTGACGGCAC ACACAGCTGA CGACCGCACG
GAGACGTTCA TGATGAACGT GATGCGCGGG TCAGGCATGA GCGGTCTAAC GTCAATTCCT
AGGCATCGCG GGTTGATTTA TCGTCCGCTG CTTAACTATA CACATGAACA GCTCAAAGAC
TGGCTGAAAG CTCGTAATTT GGACTGGCAC GAGGATGCCA CCAACACCGA CACCCACTAT
CTACGTGTGT ATATGCGTCA TAATGTACTT CCTCTGCTTA AGGCGAGAAA CCCGTTATTG
GTGCAGACGG TGTGCAAAAT TGCAGATTTG ATGACTGATG AAGACGATTA TCTTGAGGCA
AAAGCTGCGC GTAAGCTGAG ACAGATTACG CTTCGCAAGG GCGAATCTTT GCTAGTACTT
GACGCGCTGA AGCTGAGTTC TACCGACGTG GTGATTGCTC GTCGCGTAGT GAGAATTGTG
GCTCGGCAAC TGATTCCTGA GGCATGGCTT GAGTTCAGAC ATGTAGATGC CGTGCTTGAG
GCGGTTGCTG CGGGAGCTGG CGTAGCTAAT TTGCCGCAAA ACCTTGAGGC GCGCGTTCGT
TTGGGCACCG TAACGTTTTC GTTCACGGGC GCCGCAAGAA GCGTGGTGAG CGTTGATGAT
GCTGAGACAA GCAATAAAGC TGCAGGTACA GTACACGTTA CAGCAACGTT TGGCGAGCAC
CTTGCAGTTC CGGGAACGCT GGAGCTTGCA GACGGTCGAG TGCTTTCGGC ACGCATTCTC
CCCGTGGAGC ACGGCTTTGA CGTCGTGTCT TATGCAACCA CGCATAGTCA AGAATGGTTG
GGTGAGTCGG TTCTTCTCGA CGTACAAGCC TGTGGAGTAG ATCCAATTCA CGGCGGCAGT
CTGTGGGTTT CGGGGCTTGA GGCAGGCGAT ACCATGCAGC CTTTGGGTAT GCATGGGCAG
TCAAAAAAGA TTTCTGATCT GCTGGGCGAG GCGGGTGTGC CCGTTGAGTC TAGGAGTATG
ATGCCTATTG TGCGCACAAA TATTCGTGGA TATGTAGTGT GGGTTGCGGG AATTCGTCCC
GATGAACGAG TAAAATGTAC GCAAGATACA AAACACCTGC TAGAATTGAA CATCTATTCT
GGACATAAGC CATTTGAGAG GAGCCAGTAA
|
|---|
| Protein sequence | MALLHMAATE SLDLGDGLGL AHVAKERLHV LHVNHLLRED DADADQHFVQ ETCDSLDIPC
TVLRADVAKL ARERDGNVEE IGRRVRYDAA RELAQKLCAE QGVSRQKAKI LTAHTADDRT
ETFMMNVMRG SGMSGLTSIP RHRGLIYRPL LNYTHEQLKD WLKARNLDWH EDATNTDTHY
LRVYMRHNVL PLLKARNPLL VQTVCKIADL MTDEDDYLEA KAARKLRQIT LRKGESLLVL
DALKLSSTDV VIARRVVRIV ARQLIPEAWL EFRHVDAVLE AVAAGAGVAN LPQNLEARVR
LGTVTFSFTG AARSVVSVDD AETSNKAAGT VHVTATFGEH LAVPGTLELA DGRVLSARIL
PVEHGFDVVS YATTHSQEWL GESVLLDVQA CGVDPIHGGS LWVSGLEAGD TMQPLGMHGQ
SKKISDLLGE AGVPVESRSM MPIVRTNIRG YVVWVAGIRP DERVKCTQDT KHLLELNIYS
GHKPFERSQ
|
|---|
| |