| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0060 |
|---|
| Symbol | |
|---|
| ID | 8412902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 65966 |
|---|
| End bp | 67723 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 645021626 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_003179087 |
|---|
| Protein GI | 257783870 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCTAG AGCATATTAA TGGACCGGAA GACGTAAAGA AGTTGGACTC AAAAGCTCGC
TTGACGCTTG CCCAGGAGAT TCGCGAAAAT CTGCTGGTCA TGGAGTCAAA ACACGGTGGC
CATTTTGGTC CAAACTTTGG TATTGTTGAG GCAACTATTG CGCTTCATAC CGTATTCAAC
TCGCCCGTTG ACCATATCGT TTACGATGTC TCGCACCAGA CATATCCACA CAAGATGCTC
ACTGGCCGCA AGCAAGCATA TATGGATCCC GCACTCTATG ACTCGGTGTC TCCTTACACC
GATCCTGCTG AGACTCCGCA TGACCTCTTC AAGATTGGCC ATACTTCCAC GTCTATCAGC
TTGGCGCTTG GCCTGGCAAA GGCTCGTGAC ATTATGGGCG GCAAGGAGAA TATCATCGCA
GTTATCGGCG ACGGCTCGAT GTCCGGCGGC GAAGCGCTCG AGGGTTTAAA CGTTGCTGGC
GAGCTGAACA GCAACTTTAT CATCGTTTTC AACGATAATC AGATGTCCAT TGCCGAGAAT
CACGGCGGCA TGTACGACCA GTTCGCTGAG CTGCGCCGCA CCAATGGAAC TGCCGAGAAT
AACCTTTTCA AGTCGATGGG CCTTGACTAC CTGTATGTTA ACGACGGCAA CAACATTGAG
GCTCTTATCG ACGCGTTTGA GCAGGTAAAA GATATGACTC GCCCGGTTGT GGTTCACATT
AATACGCTCA AGGGTAAGGG ATACGCTCCC GCGGAGGCAA ACAAGGAGAA GTGGCACTGG
CATATGCCGT TCGACATCCA GACTGGTCAG AGCCCAGCGT CCGGTTCGTC CGAGTCGTAC
GCCGGAATTT TTGCAGAGTA CGCGCTCAAG CGCGCAAAGA CCGATCCTAA GTTCTTGGTG
CTCATGTCAG CTGTTCCTGG CCTACTTGGT CTTTCGCAGG AACGTCGAGA AGAGCTTGGA
AAGCATTATC TTGACGTGGG CATTGCCGAA GAAACCGCAG TTGCAATGGC TTCCGGCGCG
GCTCACGCGG GCGCGCACGT AGTTTGGGGT TCAAGTGCAA CCTTCATCCA ACGTACCTAC
GACCAGTTAA CCCAGGACCT GTCGCTCAAT CAGAATCCCG CGGTTATTAT GGGCTCCGGC
TCCATTAGAG GCTTGATGGC CGCCACTCAC CAGGGCCTCA GCAGTATTTC CATGATCGCA
AACATCCCTA ACATGGTGTA CCTCGCACCG TCTAACGCCG AGGAGTACAT CGCTATGCTC
GATTGGGCGC TTGAACAGGA TAAACACCCT GTCTACATCG CAATTTCTTC CGGTCCTGTG
GTTCACGTCG AAGGTTCCGT TCGTACAAAC TTTGACGACC TCAACACCTA CGAGGTCACG
CGTCAGGGCT CCAAGGTGGC TGTTCTTGCC CTGGGCGATT TCTACGACCT TGGCGAGAAA
ACCGTCGAGG CCCTAAACTC TACTTTGGGA ATTGAAGCTA CGCTGGTCAA GCCATATTTT
GCCTCTGGCG TCGACGAAAA TTTGCTCGAC AACCTGGTAA AAGATCACGA CGTCATCGTA
ACCATTGAAG ATGGCATCAT CGAGGGTGGT TGGGGACAGA ATATTGCCAG TTACCTGGGA
ACTTCTTCCG CGCGTGTGCT GAACTACGGC GTTAAGAAGG CCTTCTACGA CCGCGTCAAC
ATTGCAGATC TTATGCGAGA AAGTCACCTT GACCCTGAAC TGATTGCTGC AGACGTCAAG
CAGGTGTTGG GTTTGTAG
|
|---|
| Protein sequence | MYLEHINGPE DVKKLDSKAR LTLAQEIREN LLVMESKHGG HFGPNFGIVE ATIALHTVFN
SPVDHIVYDV SHQTYPHKML TGRKQAYMDP ALYDSVSPYT DPAETPHDLF KIGHTSTSIS
LALGLAKARD IMGGKENIIA VIGDGSMSGG EALEGLNVAG ELNSNFIIVF NDNQMSIAEN
HGGMYDQFAE LRRTNGTAEN NLFKSMGLDY LYVNDGNNIE ALIDAFEQVK DMTRPVVVHI
NTLKGKGYAP AEANKEKWHW HMPFDIQTGQ SPASGSSESY AGIFAEYALK RAKTDPKFLV
LMSAVPGLLG LSQERREELG KHYLDVGIAE ETAVAMASGA AHAGAHVVWG SSATFIQRTY
DQLTQDLSLN QNPAVIMGSG SIRGLMAATH QGLSSISMIA NIPNMVYLAP SNAEEYIAML
DWALEQDKHP VYIAISSGPV VHVEGSVRTN FDDLNTYEVT RQGSKVAVLA LGDFYDLGEK
TVEALNSTLG IEATLVKPYF ASGVDENLLD NLVKDHDVIV TIEDGIIEGG WGQNIASYLG
TSSARVLNYG VKKAFYDRVN IADLMRESHL DPELIAADVK QVLGL
|
|---|
| |