| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0054 |
|---|
| Symbol | |
|---|
| ID | 8412896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 57034 |
|---|
| End bp | 58002 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 645021620 |
|---|
| Product | Lactate/malate dehydrogenase |
|---|
| Protein accession | YP_003179081 |
|---|
| Protein GI | 257783864 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTCA TCAGCAAGAT TGGTATTATC GGCGCTAATC ATGTTGGCGC ACACGTTGCA
AACGCCCTGC TTTACCAGGG ACTTGTTACT GAGCTATACA TTAGCGATAC AAATGAGGTT
CTGTGTAAAG CTCAGGTAAA CGATTTGTTG GACGCAATGC CATTTTATCC ACACCCCGCT
CGCGTCTTTG AGCTTGATGA CCGGTATGAG GAGCTTGCTG GCTGCGACAT TATTGTTAAT
GCCGCTGGTC ATGTAGCTGC TGCTGCAGGC AACCGCGATG GCGAGCTCTT TGTCACCACT
GACGAGGCCA AGAAGTTTGC AAAGCGTATT GCAGATGCTG GCTTCAATGG CGTTTGGGTC
AACATCGCAA ATCCCTGCGA CGTTGTTACC ACTGAGCTCC AGTATCTGAC CGGCGCCGAT
CCTTACAAGG TTATTGGCTC CGGTACCACG CTGGACTCCG CTCGACTCCG CCACGCTCTT
TCCGGCGCTA CCGGCTATCC AGCATCTTGC ATCAACGCTT GGATGCTTGG CGAGCATGGA
AATGGTATGT TCGCCTGCTG GTCGCATGTT TCCATTGGCT GCCTCACCCT CGACGAAGTT
GCAGCTCAGA CAGGCAAGAC CTTTGACCTT TCAGAGCTTG AGCAGGCTGG ACGCATGGGC
GGTTATGTCA CTTACAGCGG CAAGCAGTGC ACCGAGTACT CTATTGCAAA CGGTGCCGTT
GAGGTCATCA AGGCTATTGT TCACGACACC AAGTTGATTA CGCCAGTTTC CACGTTACTC
ACTGACGTGT ATGGAGTTTC TGGCTTCTAC TCTTCACTTC CTGCAGTCAT CGGCGCTAAT
GGTGTCGAGA AGGTCTTTGT GCCCGAGCTC TCTGACTCCG AGATTGAGGC ATGGCGCAAG
TCTTGCGAGC ACGTCAAGGG CAACATCGAC CAGCTCGGCT GGCTTGAGGT AGACGCTCGC
ATTGACTAG
|
|---|
| Protein sequence | MALISKIGII GANHVGAHVA NALLYQGLVT ELYISDTNEV LCKAQVNDLL DAMPFYPHPA
RVFELDDRYE ELAGCDIIVN AAGHVAAAAG NRDGELFVTT DEAKKFAKRI ADAGFNGVWV
NIANPCDVVT TELQYLTGAD PYKVIGSGTT LDSARLRHAL SGATGYPASC INAWMLGEHG
NGMFACWSHV SIGCLTLDEV AAQTGKTFDL SELEQAGRMG GYVTYSGKQC TEYSIANGAV
EVIKAIVHDT KLITPVSTLL TDVYGVSGFY SSLPAVIGAN GVEKVFVPEL SDSEIEAWRK
SCEHVKGNID QLGWLEVDAR ID
|
|---|
| |