| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0053 |
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| Symbol | |
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| ID | 8412895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 55616 |
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| End bp | 56863 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645021619 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_003179080 |
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| Protein GI | 257783863 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGATACA AGACACCAAC ATGCTCTATT GCGCGTCGCT GCGGAGGCTG TGAATGGCTT
TCGGTCCCCT ATCCTATCCA ACTTAAGCGT AAGCAGGCGC AAGTAGAGGA ACTTCTCGCC
CCGCTGGCAA GCATCAATAA TGTAACCATT GAACCTATTC GTGGAATGGA CGAGCCTCTG
GCGTATCGCC ACAAGGCAGC AACACCATTT GCGCCGGGCA AAGGTCGCAC GGTTCGCTCC
GGTTTTTATG CAAGTGGAAC GCACCAGATC ATTGCTTCAA AGGAATGCCT GGTAGAAGAC
GGTCGAGCAC GCGCCATCCT CAACGACGTG GCATATCTTG CCGGCCAGTT CAACATCCAT
GCTTACCAAG AAGATCGCGG TAAGGGAGCG CTTCGTCATG CCGTAGTGCG CTGCGGATAT
GCCACCGATG ATGTCATGTT AGTACTAGTG GTCAACGGCC AGCGATTGCC CCATGAGCAG
GAGTTTATTG CCGCACTTCG CAAGGCACAT CCCGAGCTGA CCAGCATCTT CTTGAACGTC
AACCAGAAGC GCACCAACGC AATCTTGGGG CGAGAAACCC GTCTGCTTTG GGGCTCAACT
TCTATGAGTG ACAAACTTCT GAACTGCACG TTTGAGATTG GCCCAACCAG TTTCTACCAG
ACCAACCCCC AGCAAACCGA GGCGCTCTAT CAACTGGCCA TCGATGGCGC GCTTGCTGGC
TCCAAGCAGA CTGGCGCTAC GCTGACCGAA GCTTCCACTC AAACAGACGC TTCCGCACCG
GCCAACAACC TGCGAATTCT TGACGCTTAC TGCGGCACAG GAACCATTGG ACTTTGCTTG
GCGCACGTCG CCGAAGCTCA AGGCGTCAAC CTTCTGCTCA CTGGCGTTGA CCAGGTTGAA
AACAACATTC AGATGGCTCG CAGAAACGCT CGAAACAATA AACTTGAAGC TGAGTTTATC
TGCGACGACG CCACTCGCTA CATGCAAGCT CTGGCAAAAG ACGGTCAGAA CTTTGATGTC
ATTATTCTTG ACCCACCTCG AGCGGGATCA ACACCTGCCT TCCTCAAGGC AACTGCTCAG
CTGGCCCAGA AGAAAATCGT GTACGTAAGC TGCAACGTTG TAACGCAGGC CAGAGACCTC
AAGGTTCTTC TCGACAGCGG ATTTGCTATT GAGCGCGTGA CACCTGTGGA CATGTTCCCT
CACACCAAGC ACGTTGAGTG CGTTGTGGTG CTGTCAAGAG CTAATTAG
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| Protein sequence | MGYKTPTCSI ARRCGGCEWL SVPYPIQLKR KQAQVEELLA PLASINNVTI EPIRGMDEPL
AYRHKAATPF APGKGRTVRS GFYASGTHQI IASKECLVED GRARAILNDV AYLAGQFNIH
AYQEDRGKGA LRHAVVRCGY ATDDVMLVLV VNGQRLPHEQ EFIAALRKAH PELTSIFLNV
NQKRTNAILG RETRLLWGST SMSDKLLNCT FEIGPTSFYQ TNPQQTEALY QLAIDGALAG
SKQTGATLTE ASTQTDASAP ANNLRILDAY CGTGTIGLCL AHVAEAQGVN LLLTGVDQVE
NNIQMARRNA RNNKLEAEFI CDDATRYMQA LAKDGQNFDV IILDPPRAGS TPAFLKATAQ
LAQKKIVYVS CNVVTQARDL KVLLDSGFAI ERVTPVDMFP HTKHVECVVV LSRAN
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