| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0044 |
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| Symbol | |
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| ID | 8412886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 49402 |
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| End bp | 50064 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645021611 |
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| Product | tRNA/rRNA methyltransferase (SpoU) |
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| Protein accession | YP_003179072 |
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| Protein GI | 257783855 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
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| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTAATC TTGTATTAGT AGAGCCAGAG ATTCCTGCCA ATACTGGCAA TATTGGTCGC
ACCTGTGTCG TAAGTGGTAC ACATCTTCAT CTAGTGGGTC CGTTGGGTTT CTCGCTTGAT
GATAAAAGCC TCAAACGTGC AGGTATGGCA TATTGGAAAA GTCTTAACGT TTCTGTTTAC
GACAATTGGA ATCAATTTAT AGAGAAGAAC GGTTTAGCTG ATACGTCTAC CACACCAGAA
GGCGTTTTTG CACACGACGT TGGTATCGAT GCAGTAGATA AACCTCACCT ACACTTTCTT
ACCAAAAAAG CTAAGAAGAC GTATACGCAG GCAACATATC GTGATGGCGA TTATCTCATC
TTTGGCAAAG AAAGCCTGGG GCTATCCGAG GAACTTCTCG CTAAGCATGC AGACGAGTGC
GAGAGAATTC CGATGTTGCA AGACTCTGTC AGTCTAGTTA ACCGTGAAGA CTGGAGCCAG
AAGCACGACG CACTTGACGG TGGGGGTCAG TACTCTCATC CTGTGCTTTT ACAGCAGGAT
ATTTGCGGAA ACTTTATTGA CCCCAATGAG TTCTCGGTCA GCGCACTCAA CGTCTCAAAT
GCGGCCGCCA TTGTGCTGTA TGAAGCCCTA AGGCAAATTG GTTTTCCTGG AATGGATGTC
TAA
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| Protein sequence | MFNLVLVEPE IPANTGNIGR TCVVSGTHLH LVGPLGFSLD DKSLKRAGMA YWKSLNVSVY
DNWNQFIEKN GLADTSTTPE GVFAHDVGID AVDKPHLHFL TKKAKKTYTQ ATYRDGDYLI
FGKESLGLSE ELLAKHADEC ERIPMLQDSV SLVNREDWSQ KHDALDGGGQ YSHPVLLQQD
ICGNFIDPNE FSVSALNVSN AAAIVLYEAL RQIGFPGMDV
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