| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0002 |
|---|
| Symbol | |
|---|
| ID | 8412840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1200 |
|---|
| End bp | 2729 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 645021568 |
|---|
| Product | chromosomal replication initiator protein DnaA |
|---|
| Protein accession | YP_003179033 |
|---|
| Protein GI | 257783816 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0593] ATPase involved in DNA replication initiation |
|---|
| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.988303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAT CAATTGATTC AGACGCAATA GCTCTATGGC AAGATGCAAT AGACCTCTTG
GTTGAAGAGA ATCAACCAGA GGCTTTTATC GCTATGTTGA GAACATGCAC GCCAATTAAA
GTTGAAGATG ATACTTTGTA CGCTGAGACT TCAATGCGCT TGGCATATAA CCGTATTCTT
AAAAACTTAC CTATTGTCGA AAGATGTCTC TCGGCAGCTG CTTTTGAAGA TGTTATTTTG
AGTCTTACTC TTACAAAGTC TTCTACTCCT GTTACAACTA CTTCCACAAT GACTCCTCAA
GAGTTCAATG CCTGGAAGCA AAAAACTACT CCTATACAAG CAGTTGTTCC TGAACAGATT
CAAGATTTTG AATCCCAAGA ACAGAGCCTT GAAGAATTAA AACAACAGAC GTTAAAACGC
CGTAAGAGTA ATCCTCTCTA TGAAGAAACA TCCTTCAATT CAAATCTTAC GTTTGATCGC
TTTGTTGTTG GTGATGAGAA TGAGCTTGCC CATCAACATG CATTAAATGT TGCAAACGAC
GCAAAAGGTA AAGCAAATCC ACTTTTTATT TATGGTGCAA GTGGTCTTGG AAAAACCCAC
CTTCTGCGTG CGGTTCAAAA CTACATTAAT TCTGAAGACA TCGAGCGCGT TTGCGTTTAT
AAGGACGCTG ATGCTTTTGT TGATGACTAC GTAAATGCTG TTCGTAAAAA TGCATCAGGT
AATGCTGCAA CTGAACTCAA TAATAACTAC CAAAATATCG ATGTACTTAT TATCGACGAC
GTTCAAAAAC TTGCTGGTAA GGCAGGTACT ATTAATTTCT TCTTCAATAT TTTTAATTCT
TTAATTGATA GAGGTAAACA GATTATCCTT GCAGCTGATA GAACTCCAGC GCAGCTTGGT
ATGGGTTCTG ATGGCTTTGA TGACCGCATT ACTTCACGTA TGAGTGGTGG CATTGTTATT
GGTATTGAAT CTCCAAGTTA TGAGATGAAA CTCAATCTTA TTCATGTCTT CTGCGACCGA
GCTTTTAAAG AAAGAAATTC TTCTCTTTCT GTAGATGATA TGCCAGAAGA AATTAGTCGT
TACATGGCTG ATAAGGCAGG TCAAAGTATC AGAACGCTTG AGGGTTTCTG TAATCGTTGT
GTCACCGGAC AAATCAAAGC AAAAGAATCT GGTAAAAATA TTAAACAGGA AGAAATAGAT
AAGATTGCAG ATACGCTCTG GCGTCGTGTT TCAAAAACCG TAAATATCGA AAAGGTCCAA
GAAGTTGTAG AGAATATCTA CGGTATTAAC CATCGTGATA TTGTTGGTAA TAAAAGAAAT
AAAGAAATTG CAGAACCACG CCATGTTGCA ATTTATCTTG CACATGATCT TTGCCAATAT
ACGCTGGTAA ATATTGGTAA GCATTTTGGT GGAAGGAAAC ACGCAACAAT TTTGCACAGT
ATTGAGGTAA TCGAAGAAAA AATCAAAGAA GATAAAAGCT TCTATGATCA GATTTCTCAA
CTCAAGAAGA CTATCCTTGA ACAAAGTTAG
|
|---|
| Protein sequence | MDASIDSDAI ALWQDAIDLL VEENQPEAFI AMLRTCTPIK VEDDTLYAET SMRLAYNRIL
KNLPIVERCL SAAAFEDVIL SLTLTKSSTP VTTTSTMTPQ EFNAWKQKTT PIQAVVPEQI
QDFESQEQSL EELKQQTLKR RKSNPLYEET SFNSNLTFDR FVVGDENELA HQHALNVAND
AKGKANPLFI YGASGLGKTH LLRAVQNYIN SEDIERVCVY KDADAFVDDY VNAVRKNASG
NAATELNNNY QNIDVLIIDD VQKLAGKAGT INFFFNIFNS LIDRGKQIIL AADRTPAQLG
MGSDGFDDRI TSRMSGGIVI GIESPSYEMK LNLIHVFCDR AFKERNSSLS VDDMPEEISR
YMADKAGQSI RTLEGFCNRC VTGQIKAKES GKNIKQEEID KIADTLWRRV SKTVNIEKVQ
EVVENIYGIN HRDIVGNKRN KEIAEPRHVA IYLAHDLCQY TLVNIGKHFG GRKHATILHS
IEVIEEKIKE DKSFYDQISQ LKKTILEQS
|
|---|
| |