Gene Hmuk_2148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHmuk_2148 
Symbol 
ID8411687 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalomicrobium mukohataei DSM 12286 
KingdomArchaea 
Replicon accessionNC_013202 
Strand
Start bp2058515 
End bp2061010 
Gene Length2496 bp 
Protein Length831 aa 
Translation table11 
GC content62% 
IMG OID645020490 
Producttype II secretion system protein E 
Protein accessionYP_003177968 
Protein GI257388195 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0453138 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAATTG ATGACACGGG GGAGAGCCGG TCCGAGGTCA CTCGGGGGGA GGTGACCGAG 
GATCCGCCGG CCATCGTCGG TGAGTACACC TGGGAAGATC TTCGGCGGGA CCACCACAGC
GGGGGTCGGT TCGATCGAAG CCAGTATCTG GGCTTCGACC CGAACGACAT CGAATCGGTA
CTGACAGATG CCGCGAGCAA CGCCAAGACG CTGAAACAGC CCTTCGACGC CTACGTCGAT
CCGGCGGCGA CGCCGGTCGC GAAAGGGGTC TACACGTGGG AACACTTCAA GCAAGAGTAC
TACTACGAGG AAGACAGTAC GCCGCCGACG GACGGCGACG GCGAGAAGAT CCCGTTCGAC
CCCGCCGAGT ATCTGGGCTT CGAGCCCGAG GAAGTCGAGA GCGAACTGTC GGCGGCCGAC
GGGGCCGCAG AGCTACTCGA CAACCTCGTC GAGCAGCGAA CCGTCGACGT CAATCCGGAA
CTGGACGAAG ACGCCTTCTT CTCGACACAG GACGGTCACA CGACCGTCGT CAACCGCTAC
GATCTGGAGA AGGCCGTCCC GCTGAAGAAG AAGACGCACT TCACGGAGAT CGAGCGCTAC
TGGGTCAACA AACCCTACGC CTGCGTGATC ATCTTCCACT CTCGGAAGGA AAACGAGAAG
AAGTACTACG TCGTCGAGCC CTACCACAAC GAGATCGAGG ACGATCTCAA GGGATTCCTC
TCGAACAAGC TGAAGACCGC GATCAAGTAC TCCGAGGACG ACGTGATCGT ACAGGGGTCG
GAGGCCGACC GGGCCGACGT GATCCAGCGG GAAGCCGAGC AGCTGCTGAA CCGCTACGAT
CTGTACAGCG GCCCCGTGGG TAGCGCCGAA CCCGGAGTGC TCGATCAGTT CAAAGAGTTC
CTGGGCATGG AGGTCGAAGC CCAGGCAGTC GGGACCGGCC AGCTCGACGG CATCAGTGCC
CGGCCCGAGC CGGCCGTCCT CGAAGACGAC CCCGAGCAAC TCTCCGAGTA CCAGGTCGAG
AAGCTGCTGT ACGTCCTCAA GCGGGACTTC ATCGGCTACC AGAAGATCGA CCCGGTGAAA
CACGACATCA ACGTCGAGGA CATCTCCTGT GACGGCTACA ACTCGCGCGT GTTCGTCTAC
CACACCGACT ACGAACAGAT CATCTCGAAC GTCGAGCACG GTCGAGAGAG CCTCGACGAC
TTCGTCGTCA AGCTCGCCCA GCGCTCTGGC AAGGGCATCT CGAAGCGCCA GCCACAGGTC
GACGCGACCC TGCCGGACGG CTCGCGCGCG CAACTGACGC TCGGTCGAGA AGTGTCGGAC
CACGGGACGA ACTACACGAT CCGGCAGTTC AAGGACGTTC CCTTCACGCC GATCGACCTC
ATCAACTGGA ACACCTTCTC GCTCGACGAG ATGGCGTTTC TCTGGCTCTG TATCGAGAAC
AACAAGAGCC TCATCTTCGC TGGCGGGACC GCGTCGGGGA AGACGACCAG CCTGAACGCC
GTCTCGCTTT TCATCCCGTC GAACTCGAAG ATCGTCTCCA TCGAGGACAC CCGCGAGGTC
GAACTGCCCC AGCGCAACTG GGTCGCCAGC GTCACCCGGC CCTCGTTCGG CGACGACGAC
AAGGGCGACG TCGACGAGTT CGACCTGCTG GAAGCCGCGC TCCGCCAGCG CCCGGACTAC
ATCGTCATGG GCGAGATCCG CGGCGAGGAA GGGCGCGTGC TCTTTCAGGT CATGTCGACC
GGTCACACCA CCTACACCAC CTTCCACGCC GACTCCGTCG GCGAGGTCAT CAAGCGGTTC
ACCACCGATC CGATCAACGT CTCGAAGACG CTGTTTACCG CCCTCGACCT CGTTTCGATC
CAGACCCAGA CCCGCGTCGA CGGCAGCAAG GTCCGCCGAA ACAAGACCCT GACCGAGATC
AACGAGTACT CCGCCGAGAA CGACGAAATC AACGTCCGAG ACGTCTACGA GTGGCGCGCC
GAGACCGACG AGTACATCCA GATGGGCAAC TCCAACACCC TCGAAGAGAT CAAGTTCGAC
CGCGGGTGGA CCCAGGAGAA ACTCGACGAG GAGCTGTTCA AGCGCAAGGT CGTACTGGCA
CACCTCATCG AGAACGGGCT CAACACGTAC ACGCAGGTGG CGGCGACGAT CCAGGCGTTC
ATCAACGATC CCGGAACGAT CCTCACGCTG ATCGCCAACG ACGACCTGGA GAGTTCGCTG
GAGGACCTCC GAGAGATGGA GTCGGTCAAG ATCGACATCG ACGAGGCCAA AGAGGAGATG
GTCCCCAGAC CCGAGGCACC GCCGGAGATG CTCGACGAGA CCGCCGACAT CCTCGACAAC
GCCGGCCCGC TGTTCGAGAA GTTCCAGGAG CGCGAGACGC CGGACATCGT CTCGGCGCTG
ATGAGCGGCG ACGAGGGCAC CGAGCAGACG GACGACGAGG AGGTGGACTT CGGAGAGTTC
GTACCCAAAG CCGGCGCGGA GGCCGAAGGC GAATGA
 
Protein sequence
MAIDDTGESR SEVTRGEVTE DPPAIVGEYT WEDLRRDHHS GGRFDRSQYL GFDPNDIESV 
LTDAASNAKT LKQPFDAYVD PAATPVAKGV YTWEHFKQEY YYEEDSTPPT DGDGEKIPFD
PAEYLGFEPE EVESELSAAD GAAELLDNLV EQRTVDVNPE LDEDAFFSTQ DGHTTVVNRY
DLEKAVPLKK KTHFTEIERY WVNKPYACVI IFHSRKENEK KYYVVEPYHN EIEDDLKGFL
SNKLKTAIKY SEDDVIVQGS EADRADVIQR EAEQLLNRYD LYSGPVGSAE PGVLDQFKEF
LGMEVEAQAV GTGQLDGISA RPEPAVLEDD PEQLSEYQVE KLLYVLKRDF IGYQKIDPVK
HDINVEDISC DGYNSRVFVY HTDYEQIISN VEHGRESLDD FVVKLAQRSG KGISKRQPQV
DATLPDGSRA QLTLGREVSD HGTNYTIRQF KDVPFTPIDL INWNTFSLDE MAFLWLCIEN
NKSLIFAGGT ASGKTTSLNA VSLFIPSNSK IVSIEDTREV ELPQRNWVAS VTRPSFGDDD
KGDVDEFDLL EAALRQRPDY IVMGEIRGEE GRVLFQVMST GHTTYTTFHA DSVGEVIKRF
TTDPINVSKT LFTALDLVSI QTQTRVDGSK VRRNKTLTEI NEYSAENDEI NVRDVYEWRA
ETDEYIQMGN SNTLEEIKFD RGWTQEKLDE ELFKRKVVLA HLIENGLNTY TQVAATIQAF
INDPGTILTL IANDDLESSL EDLREMESVK IDIDEAKEEM VPRPEAPPEM LDETADILDN
AGPLFEKFQE RETPDIVSAL MSGDEGTEQT DDEEVDFGEF VPKAGAEAEG E