Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hmuk_1733 |
Symbol | |
ID | 8411257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halomicrobium mukohataei DSM 12286 |
Kingdom | Archaea |
Replicon accession | NC_013202 |
Strand | - |
Start bp | 1647734 |
End bp | 1648633 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 645020061 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_003177554 |
Protein GI | 257387781 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.17014 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTCCGCG ACTCGCCCGA ACACCGGTCG CCCGCCGATC TGCTCACCTT CGGCGTCGTC AACCTCGACA AGCCACCCGG CCCCTCCGCC CACCAGGTGG CCGCCTGGGT CCGGGACGCC GTCGACGACG CGCTCGACGC GGCCGGCGAC GACCGGACGC TCGGGCGCGT CGCACACGGC GGAACGCTCG ACCCGAAGGT CACGGGCTGT CTCCCGATCT TGCTCGGCGA CGCCGCCCGC GCGGCACGCG TGTTCGACGA CGCAGTCAAA GAGTACGTCA CGATTCTCGA ACTCCACGAC CAGGCCCCGC CGGACTTCGA CTCGATCGTC GCCGAGTTCG AGGGCGAAAT CTACCAGAAG CCCCCGCGCA AGAGCGCCGT GAAACGACGG CTCCGCAGCC GGACGATCCA CGCGCTAGAC GTCCTCGAAC GCCACGATCG CCGGGCGCTC CTGCGCGTCC GCTGTGGCTC TGGAACGTAC GTCCGAAAGC TCTGTCACGA CATCGGGCTC GCGCTCGGGA CCGGCGCACA CATGGGCGAA CTCCGACGCA CCGCGACCGG CGACTTCGAC GATCGCGACC TCGTCACCAT GGAGGACCTC GTCGACGCAC TGGCCGAGTG GACCGACAAC GACGACGAGA CGTGGCTCCA CGAGACCGTC GCACCCGCGG AACGCGCCCT GGCCGGCTAT CCCACGGTGA CCATCGCACC CAGCGCCGCC CGCGAAGTGG CACACGGCGC ACCGGTCTAC GCACCCGGCG TGATCGAGAC CGACGCCGAG CAGGGTGCCG ACGTGTGCTG CGTGACACCC GACGGCGCGG CGGTGTGTCT GGGCAGACTG GTCGGCGACC CCGACGCCGA CAGCGGCGTC GCCGTCGAAC TCGAACGCGT CCTCGTCTAA
|
Protein sequence | MVRDSPEHRS PADLLTFGVV NLDKPPGPSA HQVAAWVRDA VDDALDAAGD DRTLGRVAHG GTLDPKVTGC LPILLGDAAR AARVFDDAVK EYVTILELHD QAPPDFDSIV AEFEGEIYQK PPRKSAVKRR LRSRTIHALD VLERHDRRAL LRVRCGSGTY VRKLCHDIGL ALGTGAHMGE LRRTATGDFD DRDLVTMEDL VDALAEWTDN DDETWLHETV APAERALAGY PTVTIAPSAA REVAHGAPVY APGVIETDAE QGADVCCVTP DGAAVCLGRL VGDPDADSGV AVELERVLV
|
| |