| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2549 |
|---|
| Symbol | |
|---|
| ID | 8381702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 2741341 |
|---|
| End bp | 2742651 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645005314 |
|---|
| Product | putative transcriptional regulator, GntR family |
|---|
| Protein accession | YP_003162484 |
|---|
| Protein GI | 256833757 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.49034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.185545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCTC AAACACCACC AAGTAAGGGA ACACGGCTTG ACCCGTGGTT CGGCTCCTAC
GCCCAACGCG CTCACAACAT GCGCGCCTCC GAGGTGCGAG CGTTATTCGC GGTCGCTAAC
CGCCCCGAAG TGGTCTCCCT GGCTGGTGGG ATGCCCAACC TCAACGACCT TCCCATGGAC
ATCATCTCGA AGACGGTGTC TGACGTTGTC CTCCACGAAG GGCTTGTCGC ACTCCAATAC
GGGTCTGGGC AAGGCCACGA ACGCCTCCGT GAACACATCC TTGACGTCAT GCGACTCGAA
GGAATCAGCG CACACCCTGA CGATGTTGTG GTCACAACCG GTTCCCAGCA AGCGCTAGAC
CTTGTCACCA GGATTTTTAT TGATCCCGGT GACGTCATCG TGGCCGAAGC ACCCTCCTAC
GTTGGGGCCC TCTCCGTGTT CCGGTCCTAC GAGGCGGACG TTGCTCACGT TCCACTGGAC
GCACACGGCC TCATTCCTGC CGCTCTCGAA GAAACTCTGA CCCGCCTGGA ACGCGAGGGG
CGGCGCGCCA AGTTTCTCTA CACCATCCCG AATTTCCACA ACCCTGCCGG CGTCACCATT
TCTCTGGAAC GGCGCCACGA AATCATTGAG ATCTGCCAAC GACACGGCCT GCTCATTGTG
GAAGATAACC CCTACGGCCT CCTGGGGTTC GACGGTACCA CCCACCCCGC GATGCGTTCC
TTCGACGAAG ACGGCATTAT CTACCTGGGA TCATTCTCAA AAACTTTCGC CCCCGGTTTC
CGTATCGGGT GGGCGGTCGC ACCGCACGCT GTCCGGGAGA AACTGGTGTT AGCCGCTGAG
TCGGCCATCC TGTGTCCCTC TCACGCATCG CAACTCGCAA TCTCTGCCTA CCTGGAACAG
TGTGACTGGC AGGGGCAGAT CGCTGAGTTT CGAACGATGT ACAAGGGTCG GCGCGACGCG
ATGATCTCGG CGTTGAGCGA ACACCTGCCT GATGCATCGT GGAACGTTCC TGATGGTGGT
TTCTACACGT GGGTGAAACT TCCCCCTGGA TTGGATGCCA AGTCGATGCT CCCGCGCGCG
GTCACCGGTC GTGTGGCCTA CGTTCCTGGT ACTGCTTTTT ACTACGACGG AACCGGAGCC
GATCACATGC GGCTGAGTTT CTGTTATCCC ACTGAAGACA ACATCCGTGA GGGTGTTCGC
CGTCTCGCCC ATGTTGTTAG TCAAGAACGC GACGCCGTGG AGTTGTTTGG GACGAGCCCA
CAACTTGATG ACGTCACCGA TGTCGATGCA CCAGGACCGG ATATCGCATG A
|
|---|
| Protein sequence | MTAQTPPSKG TRLDPWFGSY AQRAHNMRAS EVRALFAVAN RPEVVSLAGG MPNLNDLPMD
IISKTVSDVV LHEGLVALQY GSGQGHERLR EHILDVMRLE GISAHPDDVV VTTGSQQALD
LVTRIFIDPG DVIVAEAPSY VGALSVFRSY EADVAHVPLD AHGLIPAALE ETLTRLEREG
RRAKFLYTIP NFHNPAGVTI SLERRHEIIE ICQRHGLLIV EDNPYGLLGF DGTTHPAMRS
FDEDGIIYLG SFSKTFAPGF RIGWAVAPHA VREKLVLAAE SAILCPSHAS QLAISAYLEQ
CDWQGQIAEF RTMYKGRRDA MISALSEHLP DASWNVPDGG FYTWVKLPPG LDAKSMLPRA
VTGRVAYVPG TAFYYDGTGA DHMRLSFCYP TEDNIREGVR RLAHVVSQER DAVELFGTSP
QLDDVTDVDA PGPDIA
|
|---|
| |