| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2537 |
|---|
| Symbol | |
|---|
| ID | 8381690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2723494 |
|---|
| End bp | 2726712 |
|---|
| Gene Length | 3219 bp |
|---|
| Protein Length | 1072 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 645005302 |
|---|
| Product | Orn/DAP/Arg decarboxylase 2 |
|---|
| Protein accession | YP_003162472 |
|---|
| Protein GI | 256833745 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGTGA GTATGAGGAC AGATGCGCGG CCTGATTCGT GCCGTCGGGT TGCTGTGGTG
GGGGCAGGGC CGAAGGCGTT GGCTGCGTTG GTGGAGTTGG AGCGGCTGCT TGCCGGTGAA
TCGTGGTCCA CTGGTGGTGA TCGGGGGCCT GTGCTCGGGC ACGACAACCA GGTGCCGGTG
TCCGTGTGGG ATCCGGCGGA GGCTGGCCCA GGCGCTGTGT GGGATCCGGC GACACCGGTT
CCGCTGATTA TGAACGTGTC AGCGAGCATT GTTGACTTGT CGTGTCCGTC GTTTCCGTTG
TCGTATGTGC AGTGGGCACA GTCGCATGAG TGTGCCGATG CGCGGGAGCA GTTTCCCCCT
CGCGCCCGGA TGGGTGAGTA TTTGCGTGCG GTGTGGGGTG CGTTGAGTGC ATCGCCGTGG
TTGAGTGTGC ACCATATTGC GCAGCGTGTG GTTTCTGTTG AGCCGGATGC GCAGGGGACC
TGGACGGTTG TTGATGAGTC CGGTGCCCGG TCTGGCGGGT GGGGGTCGGT GCTCTTGGCA
ACAGGTCACC GGACCCCGGT GGGGTGTGGT GTGTATGAGC AGGTTCGGGA CACGGTGGGG
ATGAGCGGTG CACCCGGTGA GGGTGACTGG GGTGAGGACG ATTGTGGTGA GGTCGTCATT
CGTGGTGCCG CGTTGACCGG CATTGACATG GTGTTGCTGG TGACCGAGGG GCGCGGGGGA
CAGTGGGTCA CACGCGGTCA CGAAGGTTCC AGTGAGTGGG AGTACGTGTC CTCAGGCAGA
GAACCGAGGG TTGTGACATT GCTGTCCCGG TCCGGGATCC CGCTGTCCCC GAAACCGCAG
CACACCCCAG GCCACTGGGG TGAGGTAGTG CGGTCTGTGA CATGCCAATT GGTAGATGTG
CCTCCCACCG AGGTGCTCAC ACAGCGCTGG TGGGACATTC TCCTTGATGC TGCACACAGC
TTGGCGCACC ACGTTGCGCC CGATGTGCTG TCTCGACAGC ATTTGTGGGA CGTGCTCACC
CAACCAGATC ACATCACCCC CAGCGGTGCC GTGCCTGCCT TCGACCCAGT GTCTGCGGAT
GCGCTGGCGC GCATGACCAC CCACCTGCGC ATGAACCATG GTGACCAACC ACCAGACGCC
CAGTGGGTGT GGGGGCGGGT GTGGAACCTG GGGTACCGCG ACATCATCGG GTCGCTGAAT
CGCGGGCCAC GTCCCCGCGC AGGGTGGGAA TTGTTCCGTC ACGTAGCGGT CAACGCGGAA
CGGTGGGCGT ATGGTCCACC AGAAAAAACA GTGCGCAAAC TGATTGCGCT CACCCAACGC
GGGCTCCTGC GATGGGCCGT GACACCACCG GTGGCGGTGG GGGAGGAACA CATCGTTCCA
GCAGTGACAC AACCAGCAGG AGTGCTCACA CACCCGCGCC CGTGGGAAGG GGACACACCC
ACGCCAACCG ATGCGCCCGA CCCCCTGTGG CGCTCCCTGC TCACCAACGG TGATGTCACC
GTCCGACCTG GAGAACGCGG GATCCTCACC GACCACACCA CCACCTGCAT CAACGCCAAC
GGAACCCCCA CCCACGGGTT GCACGCACTA GGACGACCCA CCGAAGACCC CATCATCGGA
CACGACACCC TCAACCACAC CCTCCACGGC GACTGTGCCG CCTGGGCGGC GACCATCCAC
ACCCGCCTCC ACACGGCCGC AACCACACCA GCCCGCTACC CACACACGAT GAAAGGAACA
CCAGTGTCCA CCCCACTCCT GTGTCAAGGA GTCACCCCCC TCACCGCCCG CACCGAACCC
TGGATGACCG CACTCCTCAC CGACCCCAAC CAGTGCGCCA CCCTCCTCGA CACCTACGGG
TCACCACTCA ACATCCACAA CTTTGACCCC CTGACCCGCA ACATCACCGA ACTCACCAAC
ACCGCCAGCC ACCACGGCAT CCGGTTCGCC GTTTACGTCG CCCGGAAAGC CAATAAAACC
CTCAACCTCG TCACCGCCGC CCACACCCAA GGCGCCGGAA TCGACGTGGC CAGCACCCGC
GAACTACGCC AAACCCTCGC CGCTGGGGTT CCCGGCCCAC GCATCGTCTT CTCCGCCGCC
ATCAAAACCC GCGACGCCAT CACCGACGCC CTCCGCAACA ACGTCACCAT CAGCCTCGAC
AACCTCGACG AAGCCCACCT CGTCACCACC ACCGCCCACA CACTCGGGCT AACCGCCCAC
ATCGCCTTCC GCCTCGCCAT CACCGACCCC CACATTGCTC CCACCCGCTT CGGCCTCCCT
GCAACCGACT GGCTCACCTG GCTCACCACC ACCAACCACA CCCACATCAG CGTCGACGGA
CTCCACTTCC ACCTCAACGG GTACTCCGCC ACCGAACGCG CCACCGCACT CCGCCACGCC
ATCACCACCA TCGATGACCT CCGCGCTCGC GGGTGCCCGG CATCATTCAT TGACATGGGT
GGTGGTGTCC CCATGTCGTA CCTTGACAAT GGTGAGCAGT GGCACCAGTT CTGGGCTGCT
GTTGACCGTC AACCTGCGAG TTCGTGCGAG GTGACGTGGC GTGGGGACCG TTTGGGTTTG
GTTGATGCGG GCGCTGATCG CCCGTCGCCG TCCGTGTACC CCTATTACCA GGATGTGGTG
CGTGGGGAGT GGCTGGAGAA CATTGTGACC AGCCCGGTTG CGGCCCCCAC CGTGCACGAC
GGGCATGGCT CTGATCGTCC CACACCGGAC ACCACCATTG CCGATGCGCT GGCCAGCCGT
GACATCGAGT TACGGTGCGA ACCGGGCCGG TCCATGCTTG ACGGGTGCGG GATGACGTTG
GCGCGGGTGA TGTTCCGGAA ACACACAAGC GATGGGGTGC CGCTGGTGGG GTTAGCGATG
AACCGCACTC AGGTGCGGTC CACGTCGGTA GATTTTTTGG TGGATCCAGT CCTCGTACGC
CCCACAGATG CGGGGGAACC CAACGAGCCT GGGTCAGGGT TCTTCGTGGG GGCGTACTGC
ATTGAAGAGG AACTGCTAGC ACGCCGGCGA TTTGTGTTTC CGCAGGGTGT GGCCGTGGGG
GATATTGTGG CGTTCCCTAA TACGGGCGGC TACCTCATGC ACATTGTCGA GTCTGCGTCA
CACCAAATCC CGTTGGCCGC GAACATTGTC GCCACCGGTG ACCGGTGGGA GCTCGACCCA
GGAGACACCA GTGACGCAAG AGCAGGATCG ACTAACTGA
|
|---|
| Protein sequence | MVVSMRTDAR PDSCRRVAVV GAGPKALAAL VELERLLAGE SWSTGGDRGP VLGHDNQVPV
SVWDPAEAGP GAVWDPATPV PLIMNVSASI VDLSCPSFPL SYVQWAQSHE CADAREQFPP
RARMGEYLRA VWGALSASPW LSVHHIAQRV VSVEPDAQGT WTVVDESGAR SGGWGSVLLA
TGHRTPVGCG VYEQVRDTVG MSGAPGEGDW GEDDCGEVVI RGAALTGIDM VLLVTEGRGG
QWVTRGHEGS SEWEYVSSGR EPRVVTLLSR SGIPLSPKPQ HTPGHWGEVV RSVTCQLVDV
PPTEVLTQRW WDILLDAAHS LAHHVAPDVL SRQHLWDVLT QPDHITPSGA VPAFDPVSAD
ALARMTTHLR MNHGDQPPDA QWVWGRVWNL GYRDIIGSLN RGPRPRAGWE LFRHVAVNAE
RWAYGPPEKT VRKLIALTQR GLLRWAVTPP VAVGEEHIVP AVTQPAGVLT HPRPWEGDTP
TPTDAPDPLW RSLLTNGDVT VRPGERGILT DHTTTCINAN GTPTHGLHAL GRPTEDPIIG
HDTLNHTLHG DCAAWAATIH TRLHTAATTP ARYPHTMKGT PVSTPLLCQG VTPLTARTEP
WMTALLTDPN QCATLLDTYG SPLNIHNFDP LTRNITELTN TASHHGIRFA VYVARKANKT
LNLVTAAHTQ GAGIDVASTR ELRQTLAAGV PGPRIVFSAA IKTRDAITDA LRNNVTISLD
NLDEAHLVTT TAHTLGLTAH IAFRLAITDP HIAPTRFGLP ATDWLTWLTT TNHTHISVDG
LHFHLNGYSA TERATALRHA ITTIDDLRAR GCPASFIDMG GGVPMSYLDN GEQWHQFWAA
VDRQPASSCE VTWRGDRLGL VDAGADRPSP SVYPYYQDVV RGEWLENIVT SPVAAPTVHD
GHGSDRPTPD TTIADALASR DIELRCEPGR SMLDGCGMTL ARVMFRKHTS DGVPLVGLAM
NRTQVRSTSV DFLVDPVLVR PTDAGEPNEP GSGFFVGAYC IEEELLARRR FVFPQGVAVG
DIVAFPNTGG YLMHIVESAS HQIPLAANIV ATGDRWELDP GDTSDARAGS TN
|
|---|
| |