| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2390 |
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| Symbol | rumB |
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| ID | 8381544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 2554444 |
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| End bp | 2555592 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645005151 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_003162326 |
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| Protein GI | 256833599 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.437044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGTGCC ACCACTTTGA CGCACACAGG TGCCGTTCGT GCGCCCTCCT TGACATCCCC
TACGAGCGTC AACTCGCCAC AAAAGCCGCT GACGTGCACG CACTCCTTGG GGAATACCCC
GATCTTGACT GGCTCCCTCC CGTTGCCAGT GCCCAAGCAG GGTTTCGCAA CAAAGCGAAA
ATGGCGGTAT CTGGCACAGC AGACAACCCG ATCCTTGGGA TCCTTGATGC GTCCTTTGGT
GGCGTTGACC TGCGTGATTG CCCTTTGTAC ACGCAGGGCA TGCAGGAAGT GCTTGACGCG
GTGAGGGCCT TCATCATGGC CGCCCGCATA GAACCGTATC GAGTTGCTGA CCGGCGTGGT
GAACTCAAAT ATGTCCTCGT CACCGAATCC CCGGACAGTG AGTACATGGT GCGATTCGTG
GCCCGCTCGC AGGAACCGGT TACGCGCATC AGCAAGCACC TTCCCGGTTG GCTCGCCGAG
AATCCGCAGG TGCGGGTGGT CACTGTCAAC CTGCAACCTG AACACAAAGC GATCCTCGAA
GGGGATCGAG AAATTGTCCT CACCAAAGAC AACTCCTTGA CGATGCGGGT GGGCGACATT
CCTCTCTACC TGCGTCCGCA GAGTTTTTTC CAAACCAACA CCCCCGTTGC GGCGCACTTG
TACCGTCAAG CGGAGCAGTG GATTGCCGAT GCGCGCCCAC AGCACGTGTG GGACCTGTTC
TGCGGGGTGG GTGGGTTCGC TTTGCATGCT GCGCCGCATG CTAACCGGGT TACCGGGGTG
GAAATTAGTG CAGAAGCGAT CGAATCTGCG CGCACCAGCG CGGCCGAACG GGCACTCACA
AACGTGACAT TTGATGCCCT CGATGCCACG ACGTTCAGTA CCGGACATAG TGCACGGCTA
GCTGATGGCG GACCTGATCT TGTCGTGGTT AACCCGCCAC GGCGAGGGAT CGGCGTGGAC
CTTGCCGAGT GGTTGAACGC AAGTGACGCG CACACCGTTG TGTACTCAAG CTGCAACGCC
CGGTCACTCG CGAAAGACCT CACCGCCATG CCGCAGTTTC AGCCCACCCG CGCCAGGCTA
TTCGACATGT TTCCCCACAC CAACCACGTT GAGACGGTAG TATTGATGTC AAAGGTTGCG
ACAGACTAA
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| Protein sequence | MQCHHFDAHR CRSCALLDIP YERQLATKAA DVHALLGEYP DLDWLPPVAS AQAGFRNKAK
MAVSGTADNP ILGILDASFG GVDLRDCPLY TQGMQEVLDA VRAFIMAARI EPYRVADRRG
ELKYVLVTES PDSEYMVRFV ARSQEPVTRI SKHLPGWLAE NPQVRVVTVN LQPEHKAILE
GDREIVLTKD NSLTMRVGDI PLYLRPQSFF QTNTPVAAHL YRQAEQWIAD ARPQHVWDLF
CGVGGFALHA APHANRVTGV EISAEAIESA RTSAAERALT NVTFDALDAT TFSTGHSARL
ADGGPDLVVV NPPRRGIGVD LAEWLNASDA HTVVYSSCNA RSLAKDLTAM PQFQPTRARL
FDMFPHTNHV ETVVLMSKVA TD
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