| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2251 |
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| Symbol | |
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| ID | 8381407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 2440126 |
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| End bp | 2443260 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 645005010 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003162189 |
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| Protein GI | 256833462 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGTGT TCAACGAGAA CACTGTCGAG CTGGCGGCGT TGGAGTACTT CGCGGAGCTG
GGCTACCGCA CGCTGCATGG GCCGGATATC GCTCCTGGTG AGCCGGGAGC GGAGCGCGAC
TCCTATGAGG AGGTGTTCTT GTGGGGGCGT CTGCGTGATG CGATCAGGCG GATCAATCCG
GGGACTTCTC CTGCCCTTGT CGATGAGGCG ATCAAGCGGG TGCGTCGGGC GGAATCGCAA
AGCCCGATCG ACGAGAACTA CCGGCTGCAC CAGCTCATCA CGGAGGGTGT GCCTGTCGAG
CATCGGGATG CAGACGGTGC GCTGCGGACG ACGCGGTTGT GGCTGGTCGA CTTCGAGCGC
CCCGAGAACA ACGACTGGGT GGCGATTAAT CAGTTCACGA TCGTCGAGAA CGGCAAGAAC
CGTCGGCCGG ACGTGCTGGT GCTGGTCAAC GGTCTCCCAC TGGCCCTGCT GGAGTTGAAG
AACCCGACGG CGGAGCACGC GACGCTGAAG TCGGCGTGGA ACCAGGTGCA GACGTACCGG
CAGGACATCC CGTCGGTGTT CGTGCCGAAT GCCGTGACGG TGATCACGGA CGGCACCTCG
GCGGCGATGA GCAGCTACGC AGGCGCGTTC GAGCACTACG CCCCGTGGAA GACCATCGAG
GGCCGCGAGG TGGTCAGCGA CGGCCCGGCG CTTGAGGTGC TTATCAAGGG GGTGTTCGAG
CCGAAGCGGT TCCTCGATCT GTTGCAGAAC TTCATCGTCT TCAGCGACGA GACCGCGACC
GACAAGGCCA CCGGGCAGCC GACGCGGTTG CTCGTGAAGC GTGTGGCGAA GTACCACCAG
TACTGGGCGG TGAACGCGGC GGTCGAGTCG ACCGTGCAGG CGTCCCGTCC GGACGGCGAT
CGTCGTGGTG GTGTGGTCTG GCATACCCAA GGTTCGGGCA AGAGCTTCGA GATGGTCTTC
TATGCCGCGA AGATCATGCG CGATTCCCGG ATGGCGAATC CGACGCTGGT GTTCATCACT
GACCGCAACG ACCTGGACGA CCAGCTCTTC GGGGAGACGT TCGCCCCGGC ACGCATCCTG
CCGGAGACCC CGGTGCAGGC CACAACGCGT ACTGACCTGC GCTCGAAGTT GAAGCGTGCA
TCGGGTGGCA TCGTCTTCAC GACGCTGCAG AAGTTCGCTC CCGGTGAGGA CGGCGATGCC
AACCCGGTGC TGACGGATCG TTGCAACGTC GTCGTCGTGG CCGATGAGGC GCATCGCAGC
CAGTACGGCT TCGGCGAGAC GCTGGACCGT CATGGCCGCT TGCGCGCAGG TCTGGCGAAG
CACATGCGAG ATGCTTTGCC TGGTGCTACC TACCTCGGCT TCACCGGTAC ACCGATCGAG
TCAGGTGACA AGTCCACCCG CTCGGTGTTC GGTGACTACG TCGACGTCTA TGACCTCACG
CGTGCGGTCG AGGACGGAGC GACGGTGAAG ATATTCTATG AGTCACGTCT CGCCAAGATC
GACCTGTCTG ACGATGACCT TGCCGCGCTC GACGAACTGG CGGACGAGAT CACCGAGACC
GTCGAGGAGG ACGCAGCGAC GGCGGCGAAG TCCCGTTGGT CGCGTCTGGA AGCCATCGTC
GGCGCCGACT CACGCCTCGA CCTCATCGCC CGGGACATCG TCGAGCACTG GGAGAAGCGG
CGCGAGGCGC TGTTCGGCAA GGGCATGATC GTCACGATGA GCCGCCGGAT CGCGGTGCGG
CTCTACGAGA AGATCGTCGC GCTTCGCCCT GACTGGCATT CGGACGATCC CGCCAAGGGC
AAGATAAAAG TCGTCATGAC CGGCTCGGCA GCGGACCCCG CCGAGTTCCA GCCACACATC
TATCCCAAGG ACGTCCGCAA GGATCTCAAG CTCCGGGCGA AGAACCCCGA TGACGAGCTC
GAACTCGTCA TCGTCCGCGA CATGTGGCTG ACCGGCTTCG ACGCGCCGTC CATGCACACG
ATGTACGTCG ACAAGACCAT GCAGGGTGCC GGGCTCATGC AGGCCATCGC CCGCGTCAAT
CGCACCTTCC GGGACAAGCC CGGCGGGCTC ATCGTCGACT ACATCGGCGT GTTCGCGAAC
CTCCAGGCGG CGCTCCAGGA GTACTCGCCC TCCGACCGTG ACCAGGCCGG CGTACCGATC
GACGAGATGG TCGCCGTCAT GCTGGAGAAG CACGACATCA TCCGGGGACT GCTGCACGGC
GTCGACTACG ACTCCTCGCC GACACTCACT GCTTCCCAGC GCCTGGCGGA GTACGCCAAG
GTGCTCGACT TCGTCATGGC CGACCCCGAC CGCACGAAGC GCTTCAACGA CCAGGTGCTG
GCGCTAGCCA AGGCGTTCGC GCTGGCTGGA GCGCGCGACG AGGCCGCGGC TATCCGCGAC
GATGTGCGGC TATTCACCGA CGTGCGTGCA GCCATCTTGA AGATCCAGAA CCCCGACTCC
GGTCGTGGCG GCTCCGGCGC TGTCGAGATC GACACCGCGC TGGGGCAGCT GCTCAACGAG
GCGGTAGCCG CCAACCAGGT CGTCGACATC TACAAGCTCG CCGGTGTTGA GACACCAGAG
CTGTCGATCC TGAGCGACGA GTTCCTCGAC TCGCTCGCGG ACAAGGACAA GCCCAACCTG
CAGATGGGGT TGCTGCGTCG GCTCCTCAAC GACCAGATCC GTACTGTACA GCGCACCAAC
CTTGTGCAGG CACGGAAGTT CTCCGAACTG CTCGACGAGG CGATCAATCG GTATACGAAC
CGGTCGCTGA CGACTGCGGA GATCATCGCT GAACTGGTGA AGCTTGCCAA GCAGATGCGC
GACGACCAGA AGCGTAACGA GGAGCTGGGG CTTTCTGCCG CGGAGGTCGC GCTGTACGAC
GCGATCGCCC AGAACGACGC CGCGGTCATG CACATGGGCG ATGAGACATT GAAGAAGATC
GCTGTCGACC TCGTCTGGGC TGTCCGTACC AGCGTTGTCA TCGACTGGGA TCAGAAGGAG
AGCGTCCGCG CCGCGATGCG CTCGAAGGTG CGACGCCTGC TTGCCAAGTA CGACTACCCA
CCTGATGCCG AGAAGAAGGC CATCGAGTTG GTGCTCGAAC AAGCCGAACT GTTCGCGCGT
GGAGGAGCAG AGTAA
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| Protein sequence | MSVFNENTVE LAALEYFAEL GYRTLHGPDI APGEPGAERD SYEEVFLWGR LRDAIRRINP
GTSPALVDEA IKRVRRAESQ SPIDENYRLH QLITEGVPVE HRDADGALRT TRLWLVDFER
PENNDWVAIN QFTIVENGKN RRPDVLVLVN GLPLALLELK NPTAEHATLK SAWNQVQTYR
QDIPSVFVPN AVTVITDGTS AAMSSYAGAF EHYAPWKTIE GREVVSDGPA LEVLIKGVFE
PKRFLDLLQN FIVFSDETAT DKATGQPTRL LVKRVAKYHQ YWAVNAAVES TVQASRPDGD
RRGGVVWHTQ GSGKSFEMVF YAAKIMRDSR MANPTLVFIT DRNDLDDQLF GETFAPARIL
PETPVQATTR TDLRSKLKRA SGGIVFTTLQ KFAPGEDGDA NPVLTDRCNV VVVADEAHRS
QYGFGETLDR HGRLRAGLAK HMRDALPGAT YLGFTGTPIE SGDKSTRSVF GDYVDVYDLT
RAVEDGATVK IFYESRLAKI DLSDDDLAAL DELADEITET VEEDAATAAK SRWSRLEAIV
GADSRLDLIA RDIVEHWEKR REALFGKGMI VTMSRRIAVR LYEKIVALRP DWHSDDPAKG
KIKVVMTGSA ADPAEFQPHI YPKDVRKDLK LRAKNPDDEL ELVIVRDMWL TGFDAPSMHT
MYVDKTMQGA GLMQAIARVN RTFRDKPGGL IVDYIGVFAN LQAALQEYSP SDRDQAGVPI
DEMVAVMLEK HDIIRGLLHG VDYDSSPTLT ASQRLAEYAK VLDFVMADPD RTKRFNDQVL
ALAKAFALAG ARDEAAAIRD DVRLFTDVRA AILKIQNPDS GRGGSGAVEI DTALGQLLNE
AVAANQVVDI YKLAGVETPE LSILSDEFLD SLADKDKPNL QMGLLRRLLN DQIRTVQRTN
LVQARKFSEL LDEAINRYTN RSLTTAEIIA ELVKLAKQMR DDQKRNEELG LSAAEVALYD
AIAQNDAAVM HMGDETLKKI AVDLVWAVRT SVVIDWDQKE SVRAAMRSKV RRLLAKYDYP
PDAEKKAIEL VLEQAELFAR GGAE
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