| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2195 |
|---|
| Symbol | |
|---|
| ID | 8381353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 2368633 |
|---|
| End bp | 2369307 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645004949 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_003162135 |
|---|
| Protein GI | 256833408 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATACTT CTTCTGCTTC TTCACTCACC CCCCTCCTCA ACCGCCACTT TGACGCCGTC
CTTTGGGACA TGGACGGAAC GCTCATCTCT TCTATTCACG TCACCGAACG CTGCTGGGGA
CAATGGATGG AACACTACGG ATACCCCGCC GAGCACTACC ACCAATTCCA CGGCACACCC
GCACGAACAA TCGTCGAAAC CCTCCTCCCC GCGCACCTAC ACGACGAGGG ATTTCACCGC
ATCGTCGACC TCGAAATGAA CGACACCACC GGCATCACAC TGCTCCCAGG AGCACACCAG
GCGCTAGCAG CGCTCCCCAC ACAACGCCGG GCGATCGTTA CCTCGTCCAC TCGAGACCTT
GCCCTGCGAC GTCTTGAAGT CACCGGAATC GCCATGGACA CCCTCGTCAC TGCGGATGAT
GTCACCCACG GGAAACCCCA TCCCGACCCC TACCTGCGCG CCGCCCACCT CCTTGGGGTG
GACCCAACCC GGTGTGTTGT GTTTGAAGAT GCGCCCTCCG GTCTGGCTGC AGGCCGCGCT
GCAGGGTGTG TCACAGTGGG ACTCCCCGGC ACTCACGCGC TCGCTGACCT CACCGCGGAC
GTCCTGTTGC CGTCCCTTGA GGCCATCCAG GTGGTGAGTA CCGAGGAGGG GGTTGTGTTT
AGCGCTGCCT TGTAG
|
|---|
| Protein sequence | MDTSSASSLT PLLNRHFDAV LWDMDGTLIS SIHVTERCWG QWMEHYGYPA EHYHQFHGTP
ARTIVETLLP AHLHDEGFHR IVDLEMNDTT GITLLPGAHQ ALAALPTQRR AIVTSSTRDL
ALRRLEVTGI AMDTLVTADD VTHGKPHPDP YLRAAHLLGV DPTRCVVFED APSGLAAGRA
AGCVTVGLPG THALADLTAD VLLPSLEAIQ VVSTEEGVVF SAAL
|
|---|
| |