| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1653 |
|---|
| Symbol | |
|---|
| ID | 8380822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1785456 |
|---|
| End bp | 1788512 |
|---|
| Gene Length | 3057 bp |
|---|
| Protein Length | 1018 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645004404 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_003161604 |
|---|
| Protein GI | 256832877 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000358703 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGACATCCG GAGACGACTC TCAGGAGACA CCAACCCCCA GCACCACCGA CGCGCCACGC
AAGCCCGCGC GACGCCGCGT CACCCGAACC GTCAGTGCAC CCACAGTGGA ACCCGTCAGT
TTCCTCGCAG CAGAGGCTCC TGCCCCCACC CAGCGGCTCA CAACCGCCGG AGGAGCCACC
GTCCGCACTG ACACCACCAG TGAGACCCCC GCGCCCCGCC GCTCACGCCG AGCCACCTCA
GACGGCAAAA CAACAACCCG GCGAACCAGC GCATCGTCAG ACACACAGCC CGCCAAGGCC
GCGCCCGCCA CACGCACCCC AGCAGAACAA CCACTAGACG TCATCGCATC ACTGTCCCAG
ATCGCTGGAA CACAAGAGGA CGCCGCACGG ACCGAACGGT CGAAGGCAGA CTTCAGCAAA
ATCGACCAAG CCATCAACCT CGATGCAGTC ACCAAAAAAC ACGGTAAAAC AGCCAAAACC
AGCGCCACAA CCGACGCGGA ATCGGCAGAC ACCGCTCACA GTGACACCCC CGCGCCCGCT
CGCACGACCA AGCGCACCCC CCGGCGGGCA ACAAAAGACG TCTTCGCGCC ACCAACGCAA
CCCGCAGCAG AAACCCCCGC CGCGCCCGTG CGCCCGCGGC TAGCGACAAC CGCACTGCTG
TTCCAAGCAC CAGAAGTGGT CGTCCCCACA CCAACCCCAG ACACCGAGGA CAACACCACC
AGCTCGCCAC GCCCCGCAGA AGACGACGCA CCACGCACCG GACGTCAACG GACCCGCTCA
CAAACAGACC GTCGCTCGAA AAACCGGTCA CACTCAGACG AAGCCACCAG CGACAACAAC
ACAAACGACA CCGCTGAAGA GACCACAACC ACTGAGGCCA CAACCGACGC GGACAGCGCA
ACCGACACCG CAGACGACAC CGCAGACGAC ACCCCACGCC GCCGCCGACG CCGCGGATCA
CGAGGCCGCA AATCCAAATC CACCAGCGAT GACACCACCA ATGAGTCATC CACACAAACC
CCCGACACCG CCGACGAATC GCAGCCACAA GTGTCAGACG ACGACACAAC CGGCGAGAAC
GACATCACCG ATGACACCAC CGACGACGAC AACGACGGAG AAGGATCAAG CCGTCGCCGC
CGCCGTCGCC GCCGCACCCG GTCAAGCAGC ACCGCCGACG ACGACACAGC ACGCCGCCGC
GCCTCCGATG AAGTCACCGC ACTCAAAGGC TCAACCCGCC TCGAAGCGAA ACGGCAACGG
CGCCGTGAAG GCCGCGACGC AGGCCGTCGC CGCACCATCA TCACCGAAGC AGAATTCCTG
GCACGCCGCG AATCAGTAGA CCGGTCCATG GTCGTGCGCG AAGTGGCAGG ACGCACCCAA
ATCGCGGTCC TCGAAGACGG TATCCTCGTC GAGCACTACG TCTCCCAACA AGAACAAGCC
TCCATTGCTG GGAACGTCTA CCTTGGGCGC GTACAAAACG TCCTGCCCTC CATGGAAGCG
GCATTCGTCG ATATCGGAAA AGGACGCAAC GCAGTCCTGT ACGCCGGTGA AGTGAACTGG
GACGTCCACG GTATCGAAGG TCAACCACGC CGGATCGAAG AAGCCCTCAA ATCCGGCGAC
TCCGTCCTCG TTCAGGTGAC CAAAGATCCC ATTGGACACA AAGGAGCCCG ACTCACGTCC
CAAATCACCC TTGCTGGACG CTACCTCGTC TACGTCCCCG GTGGCGGCAT GACCGGGATC
TCCCGCAAAC TCCCCGACAC CGAACGAGCA CGCCTCAAGC GCATCCTCAA AGAACTCGTG
GACGAAGGGT CCGGCGTCAT CGTGCGCACC GCCGCTGAAG GCGCGTCCGA AACCGAACTC
CGTGCGGACG TCGAACGCCT CAAAAAACAG TGGGCTGCGA TCGAAAAGAA ACGCAAAAAC
GCCAACGCAC CCGCACTGCT CCAAGGAGAA CCAGACCTCG CAATCCGCGT CGTCCGCGAC
ATCTTCAACG ACGACTTCAC CCAACTATCT GTCCAAGGCG ACCAAGCATG GGGTGAAATC
TCAGAATATG TTGGAGACCT CGCACCCGAC CTTGCCAACA AAATGTCGCG GTGGACCTCC
GAAGACGACA TCTTCGCCGC CGCGCGCATC GACGAACAAC TCGCCAAAGG GCTTGACCGA
AAGGTCTACC TCCCCTCCGG TGGATCCCTC GTCATCGACC GCACCGAAGC AATGACAGTC
ATTGACGTCA ACACCGGAAA ATTCACCGGG ACTGGCGGAA CACTCGAAGA AACCGTGACC
CGCAACAACC TCGAAGCCGC CGAAGAAATC GTGCGTCAAC TACGGTTACG CGACATTGGC
GGAATCATCG TCATCGACTT CATTGACATG GTCCTCGAAT CCAACCGTGA TCTTGTCTTG
CGGCGACTCG TGGAATGCCT GGGACGGGAC CGCACCAAAC ACCAAGTCGC AGAAGTCACC
AGTTTGGGCC TCGTGCAAAT GACTCGCAAA CGGGTGGGGC AAGGGCTCAT TGAAGCGTTC
TCCACCGCCT GCGACCACTG CAGCGGCCGC GGGTACACCA TCCACACAGA CCCCGTAGAA
CGACACGGCC ACGCCCCCTC CCCACAGTCC AGCAACACTC AGGAGGGTGA AAGTAAACGC
TCCAAGCGTC GGCGCTCCAA AGAGGCCAAA GAACCCAAAG ACACAGTCGA CACTCATACG
TCTGCTGACA AGTCTGCACC GGACACTCCC CAAGATCCTG CGACGGACCC CTCCGTCCGC
GAAGACGTGA AAACAGCGCT CGCTGCCATT GCCGCTGCTG CCGCTCACGC GCACGATGCA
CAACACGGTG AGGACCACAG TGACGATGCG CCCACAGTCA CCAGCGCATC GGCAGGTGGT
ACGGACAGCA CCGAACACAC TGCACCAACC GGTTCACCCG AGCCGGAAAC CGCACCACAG
GTGACATCCG AGGAGCAGTC TGAACCAGCT CCAAAGAAGA CCACACGAAC CCGCTCACGG
CGGGCCAGTC GCCCCGCAGG AAGCTCCGCT AAGGACGCGA CCCGCGAGAC GGAATAG
|
|---|
| Protein sequence | MTSGDDSQET PTPSTTDAPR KPARRRVTRT VSAPTVEPVS FLAAEAPAPT QRLTTAGGAT
VRTDTTSETP APRRSRRATS DGKTTTRRTS ASSDTQPAKA APATRTPAEQ PLDVIASLSQ
IAGTQEDAAR TERSKADFSK IDQAINLDAV TKKHGKTAKT SATTDAESAD TAHSDTPAPA
RTTKRTPRRA TKDVFAPPTQ PAAETPAAPV RPRLATTALL FQAPEVVVPT PTPDTEDNTT
SSPRPAEDDA PRTGRQRTRS QTDRRSKNRS HSDEATSDNN TNDTAEETTT TEATTDADSA
TDTADDTADD TPRRRRRRGS RGRKSKSTSD DTTNESSTQT PDTADESQPQ VSDDDTTGEN
DITDDTTDDD NDGEGSSRRR RRRRRTRSSS TADDDTARRR ASDEVTALKG STRLEAKRQR
RREGRDAGRR RTIITEAEFL ARRESVDRSM VVREVAGRTQ IAVLEDGILV EHYVSQQEQA
SIAGNVYLGR VQNVLPSMEA AFVDIGKGRN AVLYAGEVNW DVHGIEGQPR RIEEALKSGD
SVLVQVTKDP IGHKGARLTS QITLAGRYLV YVPGGGMTGI SRKLPDTERA RLKRILKELV
DEGSGVIVRT AAEGASETEL RADVERLKKQ WAAIEKKRKN ANAPALLQGE PDLAIRVVRD
IFNDDFTQLS VQGDQAWGEI SEYVGDLAPD LANKMSRWTS EDDIFAAARI DEQLAKGLDR
KVYLPSGGSL VIDRTEAMTV IDVNTGKFTG TGGTLEETVT RNNLEAAEEI VRQLRLRDIG
GIIVIDFIDM VLESNRDLVL RRLVECLGRD RTKHQVAEVT SLGLVQMTRK RVGQGLIEAF
STACDHCSGR GYTIHTDPVE RHGHAPSPQS SNTQEGESKR SKRRRSKEAK EPKDTVDTHT
SADKSAPDTP QDPATDPSVR EDVKTALAAI AAAAAHAHDA QHGEDHSDDA PTVTSASAGG
TDSTEHTAPT GSPEPETAPQ VTSEEQSEPA PKKTTRTRSR RASRPAGSSA KDATRETE
|
|---|
| |