| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1539 |
|---|
| Symbol | |
|---|
| ID | 8380708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1653921 |
|---|
| End bp | 1654676 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645004289 |
|---|
| Product | DNA repair protein RecO |
|---|
| Protein accession | YP_003161490 |
|---|
| Protein GI | 256832763 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.379083 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTCT ATCGTGATGA CGCTGTCGTG TTGCGGGCAC AAAAGCTCGG TGAAGCCGAC
CGCATCATCA CTCTCCTCAC GCGTGAACAT GGCAAAGTTC GTGCAGTGGG TAAAGGCGTG
CGCCGGACCG GCTCGCGGTT CGGTGCACGC CTGGAACCCT TCATGCATAT TGATGTGCAA
CTCAATGAGG GGCGAACGTT TGACGTTGTG ACGCAGGTGG ATACGATCGG TGCGTATGCC
CGCGATATTT GCATTGATTA TGGGCGGTAC ACGGTGGCTG GCGCGTTAGT GGAGACTGCT
GATCGTCTCG TTGTCGCGGA GCGTGAACCG TCTGTGCAGC AGTTTTGGTT GTTGGCGGGT
GCGCTGCGGA CGTTGGCTAG CCAGCAGGTC CCCGCTGACT TGATTTTGGA TTCCTATTTG
CTTCGAGCTT TTGCCGTGGC TGGGTACGCG CCATCTTTCG ATGTGTGCGC CCAGTGTGGT
GCGCCCGGTC CACACACAGC GTTTTCCGTG GCTGCAGGTG GCGCAGTGTG TGCGCGCTGT
CGCCCACCCG GTTCTGCGTC GCCCGCGTCA GGGACGTTTA CGCACATGGC GGCTTTGTTA
GCGGGGGAGT GGGGCGTGGT TCTTTCTTCG TCGGACAGGC ACGTGCGTGA AGCTCGTGGG
CTGATCGCAG CATTTACGCA GTACCATCTT GAACGAACAA TTCGTTCGCT TCGTTTTGTG
GAAAGGTCCT CACGTGACTC CAGTTCCCCC TCCTAG
|
|---|
| Protein sequence | MPLYRDDAVV LRAQKLGEAD RIITLLTREH GKVRAVGKGV RRTGSRFGAR LEPFMHIDVQ
LNEGRTFDVV TQVDTIGAYA RDICIDYGRY TVAGALVETA DRLVVAEREP SVQQFWLLAG
ALRTLASQQV PADLILDSYL LRAFAVAGYA PSFDVCAQCG APGPHTAFSV AAGGAVCARC
RPPGSASPAS GTFTHMAALL AGEWGVVLSS SDRHVREARG LIAAFTQYHL ERTIRSLRFV
ERSSRDSSSP S
|
|---|
| |