Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1418 |
Symbol | |
ID | 8380592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 1522610 |
End bp | 1526155 |
Gene Length | 3546 bp |
Protein Length | 1181 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645004169 |
Product | methionine synthase |
Protein accession | YP_003161374 |
Protein GI | 256832647 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.156555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACTC CACGCGCTTC ACGTCTTCGG CAGGCCCTGA CCCATCGCGT TGTCGTCGCT GACGGCGCAA TGGGAACAAT GCTTCAAGCA GCATCACTCA CCCTTGAGGA CTTTCACGGC TTAGAAGGCT GCAACGAAAT ACTCAACGTC ACCGTCCCTG ACGTGATCGA GTCCATCCAC GACGCCTACT TTGCGGTGGG AGTCGACTGC GTTGAATCCA ACACATTCGG TGCCAACTGG TCCAACCTCT CCGACTACGA GATCGACGAC CGGATCTACG AACTCGCTTA CGCTGGCGCA TCGATTGCAC GACGCTCCGC CGACCGAGCA GCAACCGAAC AACAGCGAGA CACCTGGGTC CTCGGCTCCA TGGGCCCAGG CACAAAACTC CCAAGCCTGG GCCACACCAC CTACGCCCAC CTCAAAACAA CCTTCACCCA GCAGGCGCTT GGGCTCCTGG ACGGTGGTGC CGACGCGTTT CTCATCGAAA CAGCCCAAGA CATACTCCAA GCCAAAGCAG CAATCAACGC CTGCCACGCC GCCATGGAAG AACGAGGCAA ACGGATCCTC ATCATGGTGT CAGTCACCGT GGAAACCACC GGCACCATGC TCATGGGCTC CGAAATCGGT GCTGCACTCA CCGCACTCAG CGCCCTCAAC ATCGACAGCA TCGGGCTGAA CTGTGCCACT GGACCAGCAG AAATGTCCGA ACACCTCCGC CACCTGTCCA AACACGCCCC CATCCCGGTC ACCTGCATGC CCAACGCAGG ACTGCCCGTC CTCGGGAAAA ACGGGGCCGA ATACCCACTG ACACCCACAG AACTCGCGGC AGCGCATCGT CAATTTGTCA CCGAGTTTGG GCTCGGGCTC GTGGGAGGAT GCTGTGGAAC CACACCCGAA CACCTCGGCG CAGTTGTTGC AGCAGTACGC GACACTTCCC CGGCGAAGCG GACGGTCACC GTAGAAAACG GGGTGGCCTC GCTGTACAGT CACACCGACT TCCACCAAGA TTCCTCGTTC CTGGCGATCG GGGAACGCAC CAACGCCAAT GGTTCCAAAG CTTTTCGTGA GGCCATGCTC GCCGAAAATT GGGACGAATG CGTGACCATC GCCCGCTCGC AAACCCGCGA CGGCGCCCAT GTTCTCGACG TCTGCGTTGA TTACGTCGGC CGTGACGGAG TTGCCGACGT CACCAACGTC GTCTCACGGC TTGCCTCCGC GTCAACGCTC CCCCTGGTCA TCGACTCCAC CGAACCTGAC GTCATCAAAG CTGCCCTCGA ACTCATCGGC GGGCGACCAG TGGTCAATTC AGTGAACTTT GAAGACGGCG ATGGTCCCAC TTCCCGCTAC GCCCGCATCA TGCCGCTTGT CAAAGAACAC GGCGCCGCAG TTGTCGCCCT GACGATCGAC GAAGAAGGCC AAGCGCGCAC ACGGGACGCC AAAGTCGCCA TCGCTACCCG GCTTATTACC GACCTTACGA CACGGTGGGG CATGTCCGTG ACCGACATCA TCGTGGACAC CCTCACATTT CCCATTGCGA CCGGTCAGGA GGAAACCCGC CGCGACGCCA TCGAAACAAT CCACGCGATC AAAGACATCA CCACCGCATT TCCTGGAATT CACACCACAC TCGGTGTCTC GAACGTGTCC TTTGGGCTTA GCCCAGCCGC CCGCCACGTT CTCAACTCGG TGTTCCTCCA CGAAGCAGTC GCAGCAGGAC TTGATTCAGC GATTGTGCAT GCCGCAAAAA TCATGCCACT CAAGAACATC CCCGACGAAC AGCGGGAGGC AGCCCTCGAC CTCATCTGGG ACCGCCGTCG ATACGACGAC GAGGGTGTGA TGATCCATGA CCCGCTCGCC CATTTCCTCA ACGTGTTTTC TGGTGTCGAC GCCGCCAGCC TCAACCAGAG CCGAGCCGAA GAACTCGCGG CACTCCCACT GACAGAACGT CTCGAACGTC GGATCATCGA TGGCGATAAC AAAGGTCTCA CCGGCGACCT CGACCAAGCG TTGTCACAGG GGATCTCCGC ACTCGACATC ATCAACGATC ATCTACTCGC AGGAATGAAA GTGGTCGGCG ACCTCTTTGG GCGCGGGGAG ATGCAACTCC CGTTTGTGTT GCAGTCCGCT GAAACCATGA AAGCCGCCGT AGCCTGGCTC GAACCACACA TGGAACGCAC GGAATCCGCG GGTAAAGGAA CCATGGTGCT CGCCACGGTG CGCGGCGATG TCCACGACAT TGGGAAGAAT CTTGTTGACA TCATTTTGAC CAACAACGGC TACAACGTCA TCAACATTGG GATCAAACAG TCCATCAACG CCATGATTGA GGCAGCAGAA GAGCACAACG CTGATGTCAT CGGAATGTCT GGACTTTTGG TGAAATCTAC CGTGGTCATG AAAGAAAACC TTGAGGAGCT CAACTCCCGC GGGTTGGCGC GAAAGTATCC CGTTCTTCTC GGGGGAGCCG CGCTCACCCG CGTTTATGTG GAAGATGACC TTGACGAGGT GTATGACGGC GTAGTTCGTT ATGCACGCGA CGCGTTTGAA GCCCTGCGAC TTATGGATTC TCTGGTGGCC ATTGCACGAG GGGCAAACTC GAACGATGTT GACCTTCCGC CTCTCAAGAA AAGACGTCAC AACGTTGTCA CAGTGACTCA AACAGCTGAA GAAGATCTTC CCGAACGGTC CACCATCGCA GCGGACAACC CGATCCCTAC CCCGCCGTTC TGGGGCACCC GGGTGGTGAA AGGAATCCAC CTGGCTGACT ATGCCGCAAT GCTCGACGAA CGAGCAACCT TCATGGGGCA ATGGGGACTC AAACCAACTC GTTCTGGTGA TGGCCCCAGC TATGAGGAAC TCGTCGAGCA CGAAGGACGA CCCCGCCTGC GCGCCTGGCT TGATCGAATT GCCACCCAAG ACATCTTCGA TCCGACCGTT CTCTACGGGT ATTTTCCGGT GTACGCGGAG GGGAACGATG TCGTCCTCCT CCACCACGAG GGACCTGACG GTGGCTCCGA AGGTGAACCA TTGACGGAAC GCATGCGGTT CACCTTTCCA CGACAACGGC GTGACCGGCA CCTATGCCTT GCCGACTTTG TTCAATCACG TGAGCGGTTC TTCGAGACGG GCACACCTGA TGTTGTTGCT GTTCAGCTGG TGACCATTGG CGACAAAGTC TCCGAACACA CCGCCCGCAT GTACGCCGAC AACCAGTACC GTGACTACCT GGAACTGCAC GGTCTCTCCG TGCAAATGAC AGAAGCCCTT GCTGAGTTCT GGCATTCTCG TGTCCGCGAA GAGTTGGGGT TCGCTGATGA GGAACCTGAC ACCACCGATG GTTTGTTCTC GTTGGAGTAT CGCGGCGCAC GGTTCTCCTT GGGATACCCA GCCTGTCCTG ACATGGAAGA CCGCCGTAAA ATTGTGCGCC TGCTTCGGGC TCGTGACTAC GGTGTGGAAC TTAGTGACGA GTTGCAGCTT CACCCCGAGC AGTCAACGGA CGCGTTCGTG TTCCATCACC CAGAGGCAAA GTACTTCTCG GTGTGA
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Protein sequence | MDTPRASRLR QALTHRVVVA DGAMGTMLQA ASLTLEDFHG LEGCNEILNV TVPDVIESIH DAYFAVGVDC VESNTFGANW SNLSDYEIDD RIYELAYAGA SIARRSADRA ATEQQRDTWV LGSMGPGTKL PSLGHTTYAH LKTTFTQQAL GLLDGGADAF LIETAQDILQ AKAAINACHA AMEERGKRIL IMVSVTVETT GTMLMGSEIG AALTALSALN IDSIGLNCAT GPAEMSEHLR HLSKHAPIPV TCMPNAGLPV LGKNGAEYPL TPTELAAAHR QFVTEFGLGL VGGCCGTTPE HLGAVVAAVR DTSPAKRTVT VENGVASLYS HTDFHQDSSF LAIGERTNAN GSKAFREAML AENWDECVTI ARSQTRDGAH VLDVCVDYVG RDGVADVTNV VSRLASASTL PLVIDSTEPD VIKAALELIG GRPVVNSVNF EDGDGPTSRY ARIMPLVKEH GAAVVALTID EEGQARTRDA KVAIATRLIT DLTTRWGMSV TDIIVDTLTF PIATGQEETR RDAIETIHAI KDITTAFPGI HTTLGVSNVS FGLSPAARHV LNSVFLHEAV AAGLDSAIVH AAKIMPLKNI PDEQREAALD LIWDRRRYDD EGVMIHDPLA HFLNVFSGVD AASLNQSRAE ELAALPLTER LERRIIDGDN KGLTGDLDQA LSQGISALDI INDHLLAGMK VVGDLFGRGE MQLPFVLQSA ETMKAAVAWL EPHMERTESA GKGTMVLATV RGDVHDIGKN LVDIILTNNG YNVINIGIKQ SINAMIEAAE EHNADVIGMS GLLVKSTVVM KENLEELNSR GLARKYPVLL GGAALTRVYV EDDLDEVYDG VVRYARDAFE ALRLMDSLVA IARGANSNDV DLPPLKKRRH NVVTVTQTAE EDLPERSTIA ADNPIPTPPF WGTRVVKGIH LADYAAMLDE RATFMGQWGL KPTRSGDGPS YEELVEHEGR PRLRAWLDRI ATQDIFDPTV LYGYFPVYAE GNDVVLLHHE GPDGGSEGEP LTERMRFTFP RQRRDRHLCL ADFVQSRERF FETGTPDVVA VQLVTIGDKV SEHTARMYAD NQYRDYLELH GLSVQMTEAL AEFWHSRVRE ELGFADEEPD TTDGLFSLEY RGARFSLGYP ACPDMEDRRK IVRLLRARDY GVELSDELQL HPEQSTDAFV FHHPEAKYFS V
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