| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1346 |
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| Symbol | |
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| ID | 8380523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1439973 |
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| End bp | 1441673 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645004095 |
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| Product | twitching motility protein |
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| Protein accession | YP_003161305 |
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| Protein GI | 256832578 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGAAA ACTTCCAACA ACCGCGGGAA CAAGCGAGCC CGCAACAGGT GAGCGAGTGG
GCTGAACAAG CAAATATGTC GCAATTATTT GCGCGTGAGT TGTCACGTGG GTCAATTCCG
CGTCCGGCTG CTTCGTACGA AGAATACGGG GGCTTCACCG AGGAACAAGT ACCTACTCGA
TCTGCTGACC CAGGGGAGGG GAGACGTGCC GCGACCTCTG TGACACCACT TCGCCGTCCC
GCAGAGTCCC CGAATGCCCA CTACGTTCAG GCTCCCGTGT CTATTCCTGC TGCTGCACAA
CCGCCGATGA TGCAGGGCGG GACTGCAGGA ACGAGCTTCG TCGATGAACA ATCTATGGTT
CAGGCTGCGG GGGCGCCGGC GAACCCGTTT GGGCACCAGG CTCCACCGTC GTTCGCGAAC
GTTCCTGGTG CGCCTCCCAC GGTTGCGCCT GCTGCGGGCG CCGCGTCTCA TGACGCAGTA
TCACCAACGC GCCGTGGACG GGGAATTGTC CAAGCAGATC AAGCAGCTGC TGGGCGCGTG
GGTATGTCGA ACGCGTTGCG TAAAGGTGAC CTCATCCTTG ACGATGTGCT GAGGGACATG
GTCGTGCAAG ATGCCTCTGA TCTTCACTTG ACCAACCGGT CGCGGCCAAT GATCAGGAAA
GCCGGTGAAC TCACGCCACT TGAAGGATAC GACGACCCGC TTGATGCCGA TGCACTACGT
CGGTCAATTT ATACGCTGCT CACCCAGAAG CAGCGGGAAC AGTTTGAAGA AGCACTGGAA
CTCGACTTTG CCTACCAAGT CCCTGATGGG GCGAGGTTCC GTGTCAATTT GTATCATCAA
CGTGATTCTG TGGGCGCGGC ATTCCGTGTG ATTCCAACGG AGATCAAACC GCTTGAGGAC
CTGGGAGTTC CTCCGTCGGT CGGGGCTTTC GCAAAACTTG CGCGTGGTTT GGTTCTTGTG
ACTGGTCCAA CTGGGTCCGG TAAATCGACA ACATTGGCGT CAATTATTGA CTTGGTGAAC
AGGTCCCGGG CTGACCACAT CATGACCGTT GAAGACCCGA TTGAGTTCTT GCATGAGCAC
AAAAAGTGCG TGGTCAACCA ACGGGAAGTG GGCACTGACA CACATTCATT TGCTTCGGCG
TTGAAGCATG TGTTGCGTCA GGACCCAGAC ATCATTCTTG TGGGCGAGCT TCGTGACCTG
GAAACAATTT CTATTGCTCT CACCGCAGCA GAGACAGGGC ACCTGGTCTT TGCCACACTG
CACACACAGG ATGCTGCGCA GACTATTGAC CGTGTCATTG ACGTCTTTCC TCCCGAACAG
CAAGAACAGA TCCGAGTACA GCTTGCGTCA GCGATCCAGG GCGTGGTGTG TCAGACGTTG
TGCAAACGCG CAGATGGTCC GGGGCGGGTT GTCGCGACTG AGGTTCTTGT GGCCACACCA
GGTATCCGCA ACATGATCCG TGAAGGTAAG ACCCACCAAA TTTATTCGTC GATGCAGGCC
GGGAAGAACG ATGGGATGCA TACCATGGAT CAGCACCTCG CTGACCTGAC AAAACGTGGA
TCAATTAGTT ACGAAGTCGG TTTGGAAAAG TGCCACAGTG CCGCTGACTA CAACAGGCTT
TCTGGACGGT CCTCGCTTCC AGTGGGGTCA GGAATCGCGA ATGCGGGCAT GGGTGGACAC
CTTGACGGGA GTAGCTTCTA A
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| Protein sequence | MTENFQQPRE QASPQQVSEW AEQANMSQLF ARELSRGSIP RPAASYEEYG GFTEEQVPTR
SADPGEGRRA ATSVTPLRRP AESPNAHYVQ APVSIPAAAQ PPMMQGGTAG TSFVDEQSMV
QAAGAPANPF GHQAPPSFAN VPGAPPTVAP AAGAASHDAV SPTRRGRGIV QADQAAAGRV
GMSNALRKGD LILDDVLRDM VVQDASDLHL TNRSRPMIRK AGELTPLEGY DDPLDADALR
RSIYTLLTQK QREQFEEALE LDFAYQVPDG ARFRVNLYHQ RDSVGAAFRV IPTEIKPLED
LGVPPSVGAF AKLARGLVLV TGPTGSGKST TLASIIDLVN RSRADHIMTV EDPIEFLHEH
KKCVVNQREV GTDTHSFASA LKHVLRQDPD IILVGELRDL ETISIALTAA ETGHLVFATL
HTQDAAQTID RVIDVFPPEQ QEQIRVQLAS AIQGVVCQTL CKRADGPGRV VATEVLVATP
GIRNMIREGK THQIYSSMQA GKNDGMHTMD QHLADLTKRG SISYEVGLEK CHSAADYNRL
SGRSSLPVGS GIANAGMGGH LDGSSF
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