Gene Jden_1152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1152 
Symbol 
ID8380329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp1231150 
End bp1232595 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content56% 
IMG OID645003897 
Productfumarate lyase 
Protein accessionYP_003161111 
Protein GI256832384 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1027] Aspartate ammonia-lyase 
TIGRFAM ID[TIGR00839] aspartate ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.265028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGA CGCGCATCGA GAAGGATCTC ATCGGAACTG AACACATCCC CAGCGATGTG 
TATTGGGGGA TCCAAACGCT GCGTGCCGTG ACGAACTTCC CGATCACCGG GATCCCGATT
TCCAGCCACC CCAACCTTAT TCGTGCGCTC GCTGCCGTGA AGATGGCGTG TGCTCACACG
AATGCTCACT TAGGCATCTT GCCTAACGAG GTGGCTCAAG CCATCACTGA GGCATGTGAG
ACAGTGATGG CGGGTCACCA CCACGACCAG TTTGTTGTTG ATGTCATTCA AGGTGGGGCA
GGGACATCAA CCAATATGAA CGCCAACGAA GTCATCGCGA ATATTGCGTT GGAACGGTTG
GGGGAACCAC GTGGAACCTA TGGTCGCGTG CACCCCAACG ACCACGTAAA CCTGTCACAG
TCAACAAACG ACGCATACCC CACATCCTTG AAAGTGGCGT TGCTGTATTC GTTACGAGAA
CTGCAAGAAT CGATGCACCA CTTGGAAGAG TCGTTTCGCT CCAAGGCAGA TGAGTTTCAC
GACGTGCTCA AAATGGGGCG CACTCAACTT CAAGACGCGG TCCCCATGAC GCTCGGGCAA
GAATTTGGCG CCTTTGCCAT CATGCTTGGC GAAGACCGGG CGCGACTTGG TGAGGCAGCA
GAACTTCTCA CAGAAATTAA CCTCGGCGCC ACAGCCATTG GAACAGGGAT CAATGCGCCA
GAAGGCTACG CAGAACTTGT AGCACGACAC CTCAGCGACA TCACAGGGTT TCCCACCACC
ACAGCCGAAG ACCTCGTGGA AGCAACACAA GACGTTGGGT CCTTTGTGCA GGTATCAGGA
ACCTTGAAGA GGGTTGCGGT GAAACTCTCC AAGATCTGCA ACGATCTGAG GTTACTGTCA
TCAGGGCCCC GGGCAGGACT GGGGGAAATC CACCTGCCAC CTGTTCAAGC AGGTTCGTCA
ATCATGCCCG GCAAAGTGAA TCCGGTGATC CCCGAAGTGG TCAACCAAGT TGCCTATGAA
GTTGTCGGAA ATGACGTCGC CATATCGATC GCTGCAGAAG CAGGACAGTT GCAACTCAAC
GCGTTTGAAC CGTTGATCTT CCACAAACTG GACTCTGGGG TGCGGCATTT GTCCCAAGCA
TGTCGAACCC TCGCAGACCG GTGCGTTTCC GGGATCACCA CTGACCGCGA CGCCCTGCAA
CGCACTGTCG AGCACTCTAT TGGCCTGGCC ACTGCCCTTA ACCCCCATCT TGGTTACGCC
ACAGCAACCT CAGTTGCAGC CGAAGCACTC GCTAGCGGAC GCGGTGTCGC TGACATTGTC
GTGGAGCGCC AACTCATGAC ACCAGAGGAG CTTGCCCTGG TTCTGAGCCC AGAACGACTA
GCGAACCTCC GGCCCAAGAT GGTTATTCCT GCGCAAGAGT CGCCGGAAAC CCACCTGTCG
CGATAG
 
Protein sequence
MTATRIEKDL IGTEHIPSDV YWGIQTLRAV TNFPITGIPI SSHPNLIRAL AAVKMACAHT 
NAHLGILPNE VAQAITEACE TVMAGHHHDQ FVVDVIQGGA GTSTNMNANE VIANIALERL
GEPRGTYGRV HPNDHVNLSQ STNDAYPTSL KVALLYSLRE LQESMHHLEE SFRSKADEFH
DVLKMGRTQL QDAVPMTLGQ EFGAFAIMLG EDRARLGEAA ELLTEINLGA TAIGTGINAP
EGYAELVARH LSDITGFPTT TAEDLVEATQ DVGSFVQVSG TLKRVAVKLS KICNDLRLLS
SGPRAGLGEI HLPPVQAGSS IMPGKVNPVI PEVVNQVAYE VVGNDVAISI AAEAGQLQLN
AFEPLIFHKL DSGVRHLSQA CRTLADRCVS GITTDRDALQ RTVEHSIGLA TALNPHLGYA
TATSVAAEAL ASGRGVADIV VERQLMTPEE LALVLSPERL ANLRPKMVIP AQESPETHLS
R