| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0580 |
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| Symbol | rpoB |
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| ID | 8379765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 626830 |
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| End bp | 630342 |
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| Gene Length | 3513 bp |
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| Protein Length | 1170 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645003317 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003160547 |
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| Protein GI | 256831820 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0311917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTGCCT CGCGCACCCC TTCTGCTCCG ACCGCCGACG CCATCGCCAC GCGCACCGCG
TCACGACGTG TCTCATTCGC AAAGATTTAC GAACCACTCG AGGTACCAGA CCTCCTCGGT
CTGCAAGTTG ATAGTTTCGA CTGGCTCATC GGGCATGACC GGTGGCGCGC CCGCGTCGAC
GCTGCCAAAG CAGCGGGACG CAAAGACGTG CCCGAAACGT CAGGGTTGGA AGAGGTCTTC
CAAGAGATCT CTCCCATCGA AGACTTCGGT CAAACGATGT CCTTGTCGTT CTCGAACTAC
CGCTTCGAGC CACCAAAACA CACCGCTGAC GAGTGTAAAG ACAAAGACTT CACCTACGCA
GCTCCGCTGT TTGTGACAGC AGAGTTCTTC AACTACAACA CGGGTGAAAT CAAGAGCCAA
ACCGTCTTCA TGGGTGACTT CCCACTCATG ACCGAACGAG GCACCTTCAT CATCAACGGG
ACCGAGCGTG TCGTTGTGTC CCAGTTGGTG CGTTCGCCAG GTGTCTACTT TGAACGGACA
CCGGATAAAA CCAGCGACAA AGACATTCTC TCCGCGAAGA TCATCCCCTC GCGCGGTGCA
TGGCTTGAGT TTGAAATCGA CAAGCGTGAC GCTGTCGGTG TGCGCGTTGA CCGCAAACGT
AAGCAATCAG TGACTGTTCT CCTGAAGGCG CTTGGCATGT CCGAGTCGGA AATCCGGGAA
ACCTTCGCTG AATTCCCTGT TGTCCTTGAC GTTCTCGAAA AGGACTCAGT GCACACCGAA
GAAGAGGCTC TCGTCGACCT CTACCGTAAA ATCCGTCCAG GTGAGCCACC CACAGTTGAG
GCTGGACGTA ACCTGCTGGA GAACTTTTAC TTCAAGCCAA AGCGTTACGA CCTCGCCAAG
GTTGGCCGCT ACAAGCTCAA CAAGAAGATC GGTGTTGACG CAGCCATCGA CCAGGCTGTT
TTGAGCTTGG ACGACATCAT TGCAACGATC AAGTACCTTG CTGCACTGCA CGCAGACAAG
AACTCAATGA GTGTCGACAT TGACGGTCAA GCAACCGATA TTCGCGTTGA AACTGACGAC
ATTGACCACT TCGGTAACCG TCGCATTCGC GCTGTTGGCG AGTTGATCCA AAACCAAATC
CGTACGGGTC TTTCCCGCAT GGAACGTGTC GTGCGGGAAC GGATGACAAC GCAAGACGTT
GAAGCGATCG CACCACAAAC ACTCATCAAC ATCAGACCAG TCGTAGCAGC GATCAAGGAG
TTCTTCGGAA CCTCTCAGTT GTCGCAGTTC ATGGACCAGA ACAACCCGCT CGCCGGTTTG
ACCCACAAGC GCCGCCTGTC AGCGCTTGGT CCAGGTGGTT TGTCTCGTGA CCGGGCAGGC
ATGGAAGTGC GAGATGTTCA CCCATCCCAC TATGGCCGCA TGTGCCCCAT CGAGACACCA
GAAGGCCCCA ACATTGGTCT GATTGGTTCG CTTGCCTCCT TTGGTCGCAT CAACCCGTTC
GGGTTCATTG AGACGCCTTA CCGCAAGGTG GAGAACGGTC GTGTCACTGA GGAACTCGTC
TACCTCACCG CTGACGACGA AGACCGCTAC GTCATTGCCC AGGCAAACAC TCCTCTCAAT
GAGGACGGCT CATTCGCTCA GGACCGAGTT CTCGTCCGTA CCAAGGGTGG CGAAACCGAC
GACGTCCTTG CAGCGGCCGT GGACTACATG GACGTCTCCC CACGCCAGAT GGTGTCTGTC
GCTACTGCGC TGATTCCGTT CCTTGAGCAC GACGATGCGA ACCGTGCGCT CATGGGCGCG
AACATGCAAC GCCAGGCTGT GCCGCTCGTG CGTAGTGAAG CTCCCTACGT GGGAACTGGT
ATGGAATGGC GTGCAGCAGT GGACGCCGGA GACGTCATCG TGGCAACAAA GCCCGGTGTC
GTCACTGAAG TGTCTGCTGA TCTCATCGTT GTTGCCAACG ATGACGGAAC CACAACGTCA
TACCGCGTCT CCAAGTTCCG GCGCTCCAAC CAAGGAACGT CCTACAACCA ACGAGTAGTT
GCCGTCCAAG ACGAACGCGT TGAAGTGGGA ACAGTCCTTG CTGATGGTCC AGCAACCGAT
GGTGGTGAAC TGGCACTCGG GCGAAACCTC CTCGTGGCGT TCATGTCATG GGAAGGGCAC
AACTTCGAAG ACGCGATCAT CCTGTCTCAG CGTCTTGTCC AGGACGATGT CCTGTCATCC
ATTCACATCG AAGAACACGA AATCGATGCG CGTGACACCA AGCTTGGTCC AGAGGAAATC
ACACGAGACA TCCCGAACGT CTCCGAAGAC GTCCTCGCCG ACCTTGACGA ACGCGGGATC
ATCCGCATCG GTGCTGAGGT TACCTCCGGT GACATCCTCG TCGGTAAAGT GACACCGAAG
GGTGAAACTG AACTCACCCC AGAAGAGCGT CTGCTCCGTG CAATCTTCGG TGAAAAAGCT
CGTGAAGTTC GCGACACCTC GTTGAAGGTT CCACACGGTG AATCCGGCAC AGTGATCGCC
ATCCGCACCT TCAACCGTGA AGACGGTGAC GAGCTGCCAG CTGGAGTGAA CGAGCTCGTT
CGTGTGTACA TCGCACAGCG CCGTAAAATC ACTGCCGGTG ACAAGCTTGC CGGTCGTCAC
GGAAACAAGG GTGTCATCTC GACCATCCTT CCAGTAGAGG ACATGCCATT CCTTGAGGAC
GGAACCGCTG TTGACGTCAT CTTGAACCCC ATGGGTGTTC CAGGACGTAT GAACGTTGGC
CAGGTTCTCG AAGTGCACCT GGGATGGATC GCAAGCCGCG GATGGGACAC CTCCTTGGTG
ACCGAGGGCA ATCTGGATTG GAAGGACACC CTTCCAGAGT TCGCTCACAA AGTGGCTCCA
GGAACCCCCG TGGCGACCCC AGTCTTTGAC GGGTTAGAAG AAGAAGCGCT TGTTGGTTTG
CTCAAGTCGA CGCTTCCCTC ACGCGATGGT GACCAGTTGG TTCAAGCTGA CGGTAAGGCT
CGCCTCTTTG ATGGTCGTTC GGGAGAGCCG TTCCCCGAGC CCATCTCAGT GGGTTACATG
TACATCTTGA AGCTGCACCA CCTCGTCGAT GACAAGATCC ACGCTCGTTC CACTGGGCCT
TACTCGATGA TTACGCAGCA GCCACTCGGT GGTAAAGCCC AGTTCGGTGG TCAGCGATTC
GGAGAAATGG AAGTGTGGGC GCTCGAAGCA TACGGTGCCG CATACACACT CCAGGAACTG
CTCACGATCA AGTCAGACGA CGTTCCAGGA CGTGTCAAGG TCTACGAAGC AATCGTCAAG
GGCGAGAACA TCCCTGACTC CGGTATCCCA GAATCATTCA AGGTCCTCCT CAAAGAGATG
CAGTCACTGT GCCTCAACGT GGAAGTCCTT TCCTCCGATG GCGTCTCCAT TGAAATGAAG
GAGAACGACG ACGAGGTATA CCGTGCAGCG GAAGAACTCG GCATCGACCT GTCACGGCGT
CCGAACGCCG CATCAAGCAT CGACGAGATC TGA
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| Protein sequence | MAASRTPSAP TADAIATRTA SRRVSFAKIY EPLEVPDLLG LQVDSFDWLI GHDRWRARVD
AAKAAGRKDV PETSGLEEVF QEISPIEDFG QTMSLSFSNY RFEPPKHTAD ECKDKDFTYA
APLFVTAEFF NYNTGEIKSQ TVFMGDFPLM TERGTFIING TERVVVSQLV RSPGVYFERT
PDKTSDKDIL SAKIIPSRGA WLEFEIDKRD AVGVRVDRKR KQSVTVLLKA LGMSESEIRE
TFAEFPVVLD VLEKDSVHTE EEALVDLYRK IRPGEPPTVE AGRNLLENFY FKPKRYDLAK
VGRYKLNKKI GVDAAIDQAV LSLDDIIATI KYLAALHADK NSMSVDIDGQ ATDIRVETDD
IDHFGNRRIR AVGELIQNQI RTGLSRMERV VRERMTTQDV EAIAPQTLIN IRPVVAAIKE
FFGTSQLSQF MDQNNPLAGL THKRRLSALG PGGLSRDRAG MEVRDVHPSH YGRMCPIETP
EGPNIGLIGS LASFGRINPF GFIETPYRKV ENGRVTEELV YLTADDEDRY VIAQANTPLN
EDGSFAQDRV LVRTKGGETD DVLAAAVDYM DVSPRQMVSV ATALIPFLEH DDANRALMGA
NMQRQAVPLV RSEAPYVGTG MEWRAAVDAG DVIVATKPGV VTEVSADLIV VANDDGTTTS
YRVSKFRRSN QGTSYNQRVV AVQDERVEVG TVLADGPATD GGELALGRNL LVAFMSWEGH
NFEDAIILSQ RLVQDDVLSS IHIEEHEIDA RDTKLGPEEI TRDIPNVSED VLADLDERGI
IRIGAEVTSG DILVGKVTPK GETELTPEER LLRAIFGEKA REVRDTSLKV PHGESGTVIA
IRTFNREDGD ELPAGVNELV RVYIAQRRKI TAGDKLAGRH GNKGVISTIL PVEDMPFLED
GTAVDVILNP MGVPGRMNVG QVLEVHLGWI ASRGWDTSLV TEGNLDWKDT LPEFAHKVAP
GTPVATPVFD GLEEEALVGL LKSTLPSRDG DQLVQADGKA RLFDGRSGEP FPEPISVGYM
YILKLHHLVD DKIHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEL
LTIKSDDVPG RVKVYEAIVK GENIPDSGIP ESFKVLLKEM QSLCLNVEVL SSDGVSIEMK
ENDDEVYRAA EELGIDLSRR PNAASSIDEI
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