| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0573 |
|---|
| Symbol | |
|---|
| ID | 8379758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 621438 |
|---|
| End bp | 621941 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645003308 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_003160540 |
|---|
| Protein GI | 256831813 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4635] Flavodoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00307777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGTAC TCGTCACCGC AGCATCACGA CACGGATCAA CACGTGAGAT CGCTGCCGAA
ATTGCCGCCA CAATTCGCGC CACAGGTATC GACGCGATCG AACGTGAACC ACGAGATGTC
ATCAACCTTG ACGGATACGA CGCCGTCATC CTTGGGTCCG CAATCTACGT CGGACAATGG
CTCGGCGACG CCAAAGACTT CGCCGACCGA CACGCCGAAG CGTTACGAGA ACGCCGCACC
TGGCTCTTCT CCTCTGGGTT AGCCAACCAA CCCAGCAAAG ACGCGAACAA CGCCCCCGCG
CTCCTTGCTC GAATGCAGCA ACTCCAAGTA GAAGGACATC GACACTTCCC CGGGAAACTC
GACGTCCTCC AACTCTCACT CGCAGAGCGC GCAGCAATCA TGGCGGCACG AGGGAAGTAC
GGAGATTCCC GAGACATGAA CGCAGTGCGC GCCTGGGCCC GCGACATCAC CAGCGCACTC
ACCGCTGTTC CCAGCCGCTC ATAA
|
|---|
| Protein sequence | MRVLVTAASR HGSTREIAAE IAATIRATGI DAIEREPRDV INLDGYDAVI LGSAIYVGQW
LGDAKDFADR HAEALRERRT WLFSSGLANQ PSKDANNAPA LLARMQQLQV EGHRHFPGKL
DVLQLSLAER AAIMAARGKY GDSRDMNAVR AWARDITSAL TAVPSRS
|
|---|
| |