Gene Jden_0314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_0314 
Symbol 
ID8379507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp334655 
End bp335746 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content61% 
IMG OID645003050 
ProductABC transporter, periplasmic binding protein, thiB subfamily 
Protein accessionYP_003160289 
Protein GI256831562 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000495948 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00896596 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCACC ACACCGCCAC CCACACACAG GCCACCCGCC GCCCACTTAC CACAACCCTC 
ACCGCCCTCA CCCTCACCGC CGCGCTCGCC GGGTGCGTGC CAGGGTCCTC AAACGAAGAC
AACGCCCAGG GGGAAACCCC CTCGACTGTG ACCGTCGTTG TTCACGACTC ATTCCAGATG
AGTGAAGAAC AGCAGGCCGA CTTCGAAAAA ACCAGCGGAT ACGACCTCAC CATTGTCACC
AACGGTGACG GGGGAGCCTT AGTGAACTCC CTGATCCTCA CCAAGGACGC CCCCATTGCC
GATGCGGTTT TTGGTGTCGA CAACACGTTT GCCTCCCGTG GCATCAGTGA AGAGGTGTTC
GCCCCCTACA CCTCCGAGGT CGCCTCCCAA ACAAGCCGTG ACCTGGCCCT TCCTGGTGAT
GACACGTTAA CGGCCATTGA CTTTGGGGAC GTGTGCCTCA ACGTGGACCC CACCTGGTTC
GAGAACCACT CCCTTGACGT CCCAGCAACC CTGGACGACC TAGCCGACCC CGCCTACCGC
AACCTCACCG TGGTCACCAA CCCGGCGACC TCCTCACCAG GGTTGTCGTT CCTGTTCGCC
ACAATCGGGA AATACGGGGA AGACGGGTAC CTAGACTACT GGACCCAACT CAAAGACAAC
GGCCTTAAAA TTGTGGACGG TTGGGAAGAC GCCTACTACG TGGACTTCAC CGCAACCGGT
GACGGAGACC GCCCCATTGC GTTGTCCTAC GCATCATCCC CAGCGTTCAC TGTCACCGAC
GACGGGTCCG CAACCACCAC ATCGGCTCTC CTGGACACCT GCTTCCGGCA AGTCGAATAC
GCCGGGGTCC TGCACGGGGC CGCAAACCCT GAGGGCGCGC AAGCATTCAT TGACTACCTC
CTCAGCGAGG ACTACCAAAC CACCATCCCC GACGCCATGT ACATGTACCC CGTCGCGGAC
ACCGTGGAAC TTCCCGATGC GTGGGCCCAG TTCGCCCCCG TCCCCACCAC CCCAATCTCC
CTAGACCCAG ACACCATCGC GCGCATGCGT GACACCTGGA TCAAAGACTG GAGCGCACAG
ATCATTGGCT AA
 
Protein sequence
MNHHTATHTQ ATRRPLTTTL TALTLTAALA GCVPGSSNED NAQGETPSTV TVVVHDSFQM 
SEEQQADFEK TSGYDLTIVT NGDGGALVNS LILTKDAPIA DAVFGVDNTF ASRGISEEVF
APYTSEVASQ TSRDLALPGD DTLTAIDFGD VCLNVDPTWF ENHSLDVPAT LDDLADPAYR
NLTVVTNPAT SSPGLSFLFA TIGKYGEDGY LDYWTQLKDN GLKIVDGWED AYYVDFTATG
DGDRPIALSY ASSPAFTVTD DGSATTTSAL LDTCFRQVEY AGVLHGAANP EGAQAFIDYL
LSEDYQTTIP DAMYMYPVAD TVELPDAWAQ FAPVPTTPIS LDPDTIARMR DTWIKDWSAQ
IIG