| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0097 |
|---|
| Symbol | |
|---|
| ID | 8379294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 107258 |
|---|
| End bp | 109636 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645002832 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003160076 |
|---|
| Protein GI | 256831349 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.73348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.128909 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATCA TGACAGCTCC CTCCACCAGC ACGACTCACC CCGCTGACAG TCACGACATG
ATCCGCGTGC GCGGGGCCCG GGAAAATAAC CTCAACGATG TCAGTGTGGA CATCCCCAAA
CGCCGCCTGA CCGTGCTGAC AGGCGTATCC GGGTCAGGAA AATCTTCTCT CGTGTTCGGC
ACAATCGCCG CCGAATCACA GCGCCTCATC AACGAAACCT ACTCAGCGTT CATCCAGGGG
TTCATGCCGA ACCTGTCCCG ACCAGACGTG GACCACCTTG ATGGGCTCAC CACCGCGATC
CTCGTCGACC AAGAACGGCT CGTCGCGAAC TCTCGCTCTA CTGTGGGCAC AGTCACTGAC
GCCCACGCAC TGTTGCGTAC CTTGTTCTCA CGTATCGCTG AACCTCACAT TGGCTCATCC
CAGGCATACT CCTTCAATGT GCCATCCGTG GAAGCATCCG GCGCTGTCAC CGTCCACCGG
GGGAACAAAG TCCGCGAAAA ACAAACATAC TCCGTCGTGG GTGGCATGTG CCCCCGGTGT
GAGGGGATCG GAAAAGTCAA CGATATTGAC CTCGCTCAGG TGTTCGACGC CTCCAAGTCA
CTGGCACAAG GCGCGATCAC TGTCCCCGGG TATACACCTG ATGGGTGGTA TGTGCGACTG
TTCAGCGAAT CTGGTTTTCT CGACCCCAAC AAACCTATTG AGAAGTACAC CAAGCGCGAA
CTGCATGATT TCCTCTACAA AGAACCCACG AAGGTGCCAG TTGGGGGCGC CAACATGACG
TACGAAGGGC TCATTCCCAA AATCCAAAAA TCGATGCTGT CCAAAGACCC CGACGCCATG
CAACCTCACA TCCGCGCCTT CGTTGAACGC GCTGTCACGT TCACCCAATG CCCTGACTGT
GAGGGCACAC GGTTGGCACA ACCTGCTCGT GAATCGCGGA TCGCTGGGAA GAACATTGCT
GATGTCTGCG CACTGCAAAT CACTGACCTG AGGGAATGGC TCAACCAGAT TGATGATGCG
GGGGTTGCTC CGCTCGTGAC TACACTGGCA GCCACCCTGG ATTCCTTTGT CACTATTGGT
TTGGGGTACC TGTCGCTTGA CCGGCCTTCA GGGACGCTGT CAGGTGGGGA AGCTCAACGC
ACCAAAATGG TGCGTCACCT CGGCTCAGCG CTCACCGATG TGACGTACGT GTTTGACGAA
CCAAGCACTG GGCTCCACCC CCATGACATA AGCCGTATGA ATGACTTGCT TCTTCAGCTA
CGCGACAAAG GCAACACCGT TCTTGTTGTT GAGCATAAAC CCGAAGTCAT CATGATTGCT
GACCACATCA TTGACCTTGG ACCAGGTGCA GGAAGCCGCG GAGGGACCAT CACCTACCAG
GGGGATGTGG CGGGGCTCCA GGCCAGTGAC ACTGTCACTG GCCACCACCT GGGGGACCGG
GTGCAGGTGA AACCCACAGT CCGCGAACCC AGCGGGGTGC TGGAGGTGCG GGGCGCATCG
GCACACAACG TCAACAACGT CGATGTGGAC ATCCCTTTGG GGGTCCTGGT TGCTGTGACT
GGGGTGGCTG GGTCGGGGAA GTCGTCACTG ATCCACAGTT CGGTTGTCCC ACGGGAGGGC
GTTGTTGCTG TGGATCAATC CCCGATTCGC GGGTCACGGC GTTCCAACCC GGCCACCTAC
ACCGGGTTAC TGGACCCGAT TCGCAAAGCG TTCGCCAAGG AAAACGGTGT AAAGCCCGCG
TTATTCTCTG CGAATTCGCA AGGAGCGTGC CCAGTGTGCC AAGGAGCAGG GGTAACCTTC
ACCGATTTAG GTGTGATGGC ATCTGTGGCC ACGACCTGCG TGGAATGTGA GGGCCGCCGC
TTCCGCTCGG ATGTCCTGGA GTACACCCTG GCAGGTTGTT CCATTGCCGA TGTGCTCGCT
CTACCCGCTG AGGAAGCGTC CCGTTTCTTC ACTGACGATG CGCCCAATCC AGCAGCAGCG
CGGATCCTGC GCCGGCTGGT CGATGTTGGG TTAGGGTACA TCACGCTAGG GCAGCCATTG
ACCACCTTGT CCGGTGGGGA ACGGCAACGC CTGAAACTTG CCACCCACAT GGGTGGACAA
GGAGATGTGT ATATCCTCGA CGAACCCACC ACCGGGCTTC ACCTCGCAGA CGTCCACCAT
CTGCTGACAC TGCTAGACCG ACTCGTTGAT TCGGGGAAAT CGGTGATTGT CATCGAACAT
CACCAAGCGG TGATGGCACA CGCTGACTGG ATCATCGATA TGGGGCCAGG TGCAGGACAC
GACGGCGGAC AAGTTGTCTT CCAAGGAACG CCTGCAACCC TTGTGGCACA AGCCTCGACC
GTGACTGGTC AACACCTCGC CGAGTATGTT GGACAGTAA
|
|---|
| Protein sequence | MGIMTAPSTS TTHPADSHDM IRVRGARENN LNDVSVDIPK RRLTVLTGVS GSGKSSLVFG
TIAAESQRLI NETYSAFIQG FMPNLSRPDV DHLDGLTTAI LVDQERLVAN SRSTVGTVTD
AHALLRTLFS RIAEPHIGSS QAYSFNVPSV EASGAVTVHR GNKVREKQTY SVVGGMCPRC
EGIGKVNDID LAQVFDASKS LAQGAITVPG YTPDGWYVRL FSESGFLDPN KPIEKYTKRE
LHDFLYKEPT KVPVGGANMT YEGLIPKIQK SMLSKDPDAM QPHIRAFVER AVTFTQCPDC
EGTRLAQPAR ESRIAGKNIA DVCALQITDL REWLNQIDDA GVAPLVTTLA ATLDSFVTIG
LGYLSLDRPS GTLSGGEAQR TKMVRHLGSA LTDVTYVFDE PSTGLHPHDI SRMNDLLLQL
RDKGNTVLVV EHKPEVIMIA DHIIDLGPGA GSRGGTITYQ GDVAGLQASD TVTGHHLGDR
VQVKPTVREP SGVLEVRGAS AHNVNNVDVD IPLGVLVAVT GVAGSGKSSL IHSSVVPREG
VVAVDQSPIR GSRRSNPATY TGLLDPIRKA FAKENGVKPA LFSANSQGAC PVCQGAGVTF
TDLGVMASVA TTCVECEGRR FRSDVLEYTL AGCSIADVLA LPAEEASRFF TDDAPNPAAA
RILRRLVDVG LGYITLGQPL TTLSGGERQR LKLATHMGGQ GDVYILDEPT TGLHLADVHH
LLTLLDRLVD SGKSVIVIEH HQAVMAHADW IIDMGPGAGH DGGQVVFQGT PATLVAQAST
VTGQHLAEYV GQ
|
|---|
| |