Gene Jden_0079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_0079 
Symbol 
ID8379276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp88169 
End bp89740 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content57% 
IMG OID645002814 
Productsmall GTP-binding protein 
Protein accessionYP_003160058 
Protein GI256831331 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG4108] Peptide chain release factor RF-3 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.125969 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.83854 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACATCGA ACGTTTCAGC CCCCACCATC CGCGAAGAAA CCGTGCGTCG GCGTTCCATC 
GCCGTGATCT CTCACCCTGA CGCCGGGAAA TCGACCATCA CCGAGGCTCT CGCGTTGCAC
GCAAAAGTCA TCAATGAAGC CGGTGCCGTC CACGGGCGTG GCAGCCGTTC GGGGGTGGTG
TCAGACTGGT TGGACATTGA AAAGAAACGC GGCATTTCGA TTACGTCTGC TGCGTTGCAA
TTCGAGTATG ACGGTTTGGT CATTAATCTG CTTGACACCC CTGGTCACGC AGACTTTTCC
GAAGACACCT ACCGTGTGTT GACCGCCGTG GACGCTGCGG TCATGCTCAT TGATTCGTCC
AAGGGGTTGG AACCACAAAC ACTGAAACTT TTTGAGGTCT GCCGCAGCCG CGGTGTTCCT
GTCATCACCT TCATCAACAA ATGGGACCGT TTAGGTAAGG ACGCCTTGGA ACTGTGTGAT
GAACTCACTG AACGCATCAA CCTTTCACCA ACCCCGATCA CCTGGCCAGT TGGTCGAGCC
GGCGAGATGA AAGGGCTGTT GGACCTCCGC GATCAGTCAG TCACGTTTTA TGAGCGCGCA
CCCGGTGGTG CAACACTTGC GCTGTCTGAA ACTGTCACCC TCGACCAAGC CCTTGAACGT
TTCCCCGACG AGGTCACAGA AGCCATGGAA GCATCAGGCC TGTTGGGTTC CCACGACCCT
GACACCTTCC ACTCCCTGAC CACATCGCCG CTTCTGTTTG GGGCTGCGCT AACAAACATT
GGTGTCGCAG AACTGTTGTC CGTGGTGAAA ACCATCGCAC CGTGCCCCGG CCCCCGCGAG
TTAGCGGACG GCACCCCTCG CCCTGTCGAT GCGCCCTTCA GTGGGTTCGT CTTCAAAATG
CAGGCGGGAA TGGACAAGGC ACACCGCGAC CACTTGGCAT TCGTGCGGGT CTGTTCCGGT
CAGTTCACCC GTGGCATGAC AGTAGTCCAA GAACGCACTG GCCGTTCCTT TGCCACAAAA
TATGCGCTGT CAGTGTTTGG CCGTGACCGC TCCACCATGG ACATTGCGTT CCCTGGTGAC
GTGGTGGGGT TGGTCAATGC GTCATCCCTG CACGTGGGGG ACACTATTCA CGCAACAGAT
TCCCCTGGCG GCTCCTACCC GCCCATGCCG CACTTCAACA CCGAACACTT CTCCACTGTG
CGAGTCAAAG ACCCCAGCAA ATCCAAACAG TTCCGCAAAG GGATCGCCCA ACTCGAACAA
GAAGGCGTCA TCCAAATCCT TGTGTCCGAG AACCGTGGTG ATGCCTCACC GATTCTCGCA
GCCGTGGGCC CCCTCCAATT TGAGGTGGCA GCCTTCCGGA TGGAACACGA GTTCCATGCG
CCCATCATCA TTGACCAGCT GGACTATTCC ATTGCAAAAC CAGCCAGCGC ATCGGATATC
GCCATGCTCG CCGGGGCATT AGGCGTGGAA ATCACGCACC GACGGGACGG CTCAGCGGTG
GCATTGATTC GAGACCGGTG GCGACTGAAC GCGTTGACAA ACAATCACCC CACACTGTTT
AGCGAGTCGT AA
 
Protein sequence
MTSNVSAPTI REETVRRRSI AVISHPDAGK STITEALALH AKVINEAGAV HGRGSRSGVV 
SDWLDIEKKR GISITSAALQ FEYDGLVINL LDTPGHADFS EDTYRVLTAV DAAVMLIDSS
KGLEPQTLKL FEVCRSRGVP VITFINKWDR LGKDALELCD ELTERINLSP TPITWPVGRA
GEMKGLLDLR DQSVTFYERA PGGATLALSE TVTLDQALER FPDEVTEAME ASGLLGSHDP
DTFHSLTTSP LLFGAALTNI GVAELLSVVK TIAPCPGPRE LADGTPRPVD APFSGFVFKM
QAGMDKAHRD HLAFVRVCSG QFTRGMTVVQ ERTGRSFATK YALSVFGRDR STMDIAFPGD
VVGLVNASSL HVGDTIHATD SPGGSYPPMP HFNTEHFSTV RVKDPSKSKQ FRKGIAQLEQ
EGVIQILVSE NRGDASPILA AVGPLQFEVA AFRMEHEFHA PIIIDQLDYS IAKPASASDI
AMLAGALGVE ITHRRDGSAV ALIRDRWRLN ALTNNHPTLF SES