Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0079 |
Symbol | |
ID | 8379276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 88169 |
End bp | 89740 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645002814 |
Product | small GTP-binding protein |
Protein accession | YP_003160058 |
Protein GI | 256831331 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.125969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.83854 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACATCGA ACGTTTCAGC CCCCACCATC CGCGAAGAAA CCGTGCGTCG GCGTTCCATC GCCGTGATCT CTCACCCTGA CGCCGGGAAA TCGACCATCA CCGAGGCTCT CGCGTTGCAC GCAAAAGTCA TCAATGAAGC CGGTGCCGTC CACGGGCGTG GCAGCCGTTC GGGGGTGGTG TCAGACTGGT TGGACATTGA AAAGAAACGC GGCATTTCGA TTACGTCTGC TGCGTTGCAA TTCGAGTATG ACGGTTTGGT CATTAATCTG CTTGACACCC CTGGTCACGC AGACTTTTCC GAAGACACCT ACCGTGTGTT GACCGCCGTG GACGCTGCGG TCATGCTCAT TGATTCGTCC AAGGGGTTGG AACCACAAAC ACTGAAACTT TTTGAGGTCT GCCGCAGCCG CGGTGTTCCT GTCATCACCT TCATCAACAA ATGGGACCGT TTAGGTAAGG ACGCCTTGGA ACTGTGTGAT GAACTCACTG AACGCATCAA CCTTTCACCA ACCCCGATCA CCTGGCCAGT TGGTCGAGCC GGCGAGATGA AAGGGCTGTT GGACCTCCGC GATCAGTCAG TCACGTTTTA TGAGCGCGCA CCCGGTGGTG CAACACTTGC GCTGTCTGAA ACTGTCACCC TCGACCAAGC CCTTGAACGT TTCCCCGACG AGGTCACAGA AGCCATGGAA GCATCAGGCC TGTTGGGTTC CCACGACCCT GACACCTTCC ACTCCCTGAC CACATCGCCG CTTCTGTTTG GGGCTGCGCT AACAAACATT GGTGTCGCAG AACTGTTGTC CGTGGTGAAA ACCATCGCAC CGTGCCCCGG CCCCCGCGAG TTAGCGGACG GCACCCCTCG CCCTGTCGAT GCGCCCTTCA GTGGGTTCGT CTTCAAAATG CAGGCGGGAA TGGACAAGGC ACACCGCGAC CACTTGGCAT TCGTGCGGGT CTGTTCCGGT CAGTTCACCC GTGGCATGAC AGTAGTCCAA GAACGCACTG GCCGTTCCTT TGCCACAAAA TATGCGCTGT CAGTGTTTGG CCGTGACCGC TCCACCATGG ACATTGCGTT CCCTGGTGAC GTGGTGGGGT TGGTCAATGC GTCATCCCTG CACGTGGGGG ACACTATTCA CGCAACAGAT TCCCCTGGCG GCTCCTACCC GCCCATGCCG CACTTCAACA CCGAACACTT CTCCACTGTG CGAGTCAAAG ACCCCAGCAA ATCCAAACAG TTCCGCAAAG GGATCGCCCA ACTCGAACAA GAAGGCGTCA TCCAAATCCT TGTGTCCGAG AACCGTGGTG ATGCCTCACC GATTCTCGCA GCCGTGGGCC CCCTCCAATT TGAGGTGGCA GCCTTCCGGA TGGAACACGA GTTCCATGCG CCCATCATCA TTGACCAGCT GGACTATTCC ATTGCAAAAC CAGCCAGCGC ATCGGATATC GCCATGCTCG CCGGGGCATT AGGCGTGGAA ATCACGCACC GACGGGACGG CTCAGCGGTG GCATTGATTC GAGACCGGTG GCGACTGAAC GCGTTGACAA ACAATCACCC CACACTGTTT AGCGAGTCGT AA
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Protein sequence | MTSNVSAPTI REETVRRRSI AVISHPDAGK STITEALALH AKVINEAGAV HGRGSRSGVV SDWLDIEKKR GISITSAALQ FEYDGLVINL LDTPGHADFS EDTYRVLTAV DAAVMLIDSS KGLEPQTLKL FEVCRSRGVP VITFINKWDR LGKDALELCD ELTERINLSP TPITWPVGRA GEMKGLLDLR DQSVTFYERA PGGATLALSE TVTLDQALER FPDEVTEAME ASGLLGSHDP DTFHSLTTSP LLFGAALTNI GVAELLSVVK TIAPCPGPRE LADGTPRPVD APFSGFVFKM QAGMDKAHRD HLAFVRVCSG QFTRGMTVVQ ERTGRSFATK YALSVFGRDR STMDIAFPGD VVGLVNASSL HVGDTIHATD SPGGSYPPMP HFNTEHFSTV RVKDPSKSKQ FRKGIAQLEQ EGVIQILVSE NRGDASPILA AVGPLQFEVA AFRMEHEFHA PIIIDQLDYS IAKPASASDI AMLAGALGVE ITHRRDGSAV ALIRDRWRLN ALTNNHPTLF SES
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