| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3209 |
|---|
| Symbol | |
|---|
| ID | 8378905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 3634516 |
|---|
| End bp | 3637521 |
|---|
| Gene Length | 3006 bp |
|---|
| Protein Length | 1001 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645002445 |
|---|
| Product | delta-1-pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_003159700 |
|---|
| Protein GI | 256830972 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01237] delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTT TGGTGTTGGA CAAAAAGATC AGCGATCGCG GCAAAGAATT TTTTGCCAGC
ATCTCCGGCG AAGCCCCCTC CATTTTCAAC AAGGGCTGGT GGACAGGCAA GGTCATGGAC
TGGTCCATGA AGAACGAGAA TTTCAAGATT CAACTGTTCC GATTTGTGGA TGTCCTGCCC
TACCTGAACA CTTCCGACTC CCTGACCCGG CACATTGACG AATACTTCGC CGGTGACGAC
CAGGATGTGC CCAAGGTTCT CAAGATGGGT GCCGGCGTCA TGGGCACCGG CCTTGGCGGC
AAGCTGGCCG CCGGACTCGT GGCCAAGGCC ATCCGCTCCA ACATCGAGGG CATGGCCAAG
CAGTTCATCA TCGGCGAAAA CACCCCTGAC GCCATGAAGA ACCTCAAAAA AATCCGCAAG
GACGGGTTCG CCTTCACCGT GGACATCCTT GGCGAGGCAT CGGTCAGCGA GATCGAGTCC
GAGGCCTACC TCAAGGAATA CATGGAGCTG CTTGACGCGC TGAAAAAGGA ACACGCCTCC
TGGGCCGGCC TCGGCGGCAA GGACCTGGAC TGGGGCCATG CGCCCAAGGT CAACATTTCC
GTCAAACCCA CGGCTCTTTT TTCCCAGGCA TCGCCCAAGG ACTTCGAGGG CTCGGTCCAG
GGCATCGAGA AACGCCTGGC CGCCATCCTG CGCAAGGTCA AGGAAATGAA CGGCTTCATG
CGCATCGACA TGGAGCAGTA CAAATTCAAA GACATCACCC TGGAAGTATA CCGCCGCCTG
CGCTCAAGCG AGGAATTCCG CGATTACCCG CATCTGGGCA TCGTGTTGCA GGCCTATCTG
AAGGATACGG ACCAGGACCT GGCCGACCTC TTGGCCTGGG CCAGAGCTGA AAAACTTCCC
ATCTCCGTCC GGCTGGTCAA GGGCGCGTAC TGGGATTCCG AGACCGTCAT TGCCAAGCAG
AACGGCTGGG ACATTCCGGT CTGGACCATC AAAGCCGAGA GCGACGCGGC CTATGAGCGC
CAGGCAAAGA TGATCCTGGA GAACCACGAC ATCTGCCACT TCGGTTGCGC CTCGCACAAC
ATCCGCACCA TCGCCGCGGT CATGGAGACG GCCAAGGCCT TGAACGTGCC CGATGAGCGC
TACGAGTTCC AGGTCCTCTA CGGCATGGCC GAACCCGTGC GCAAAGGCCT GCTCAAAGTG
GCCAAACGCG TGCGCCTCTA CGCCCCGTAC GGCGATCTGC TGCCCGGCAT GGCCTATCTG
GTCCGGCGCC TGCTTGAAAA CACGGCCAAC GAGTCCTTTT TGCGCCAATC CTTTGCCGAA
GAGGCCGAGG TGGAACGGCT GATGGAAAAC CCGGCAGTGA CCGTCGAGCG GGAAAAAGCC
CAGCGTAAGC CCAAGGCCGA GGCCGAGGTC GCGGGCCTGG CCCGCTTCGA GAACGAACCC
TTTGCCGATT TCACCCAGGA ATCCGTGCGC CAGGCTTTCA TGGATGCCGT CGCCGCAGTG
CGCGCGCAGC TTGGCAAGGA ATACCCGCTC GTCATCGGCG GTCAGGAAGT ACGCACGGCC
GACACGCTGC AGTCGGTCAA CCCGGCCAAT CCGAGCGAAA TCATCGGCAC CATCTGCCAG
GCTTCCACCA AGGAAATCGA TCTGGCCATC GAGGCAGCCA AGAAAGCGGC CCCGGCCTGG
AAAGCGCTAT CCCCGGAGGA ACGGGCCGGA TATCTGCTGA AAGCCGCCGA GATCGCGCGC
AAGGAAATCT TCACCCTCTC CGCCTGGCAG ACGCTCGAAG TGGGCAAGCA GTTCGACCAG
GCCCAGGCGG ATGTGGCCGA AGCCATTGAT TTCATGGAAT ACTATGCTCG CGAGATGATC
CGCTTCGGCA AGCCCCAGCG CATGGGCCGC GCCCCGGGCG AAATGAGCCA GCTCATATAC
CAGCCCAAAG GCATCGCCGC CGTCATCGCC CCCTGGAACT TCCCCCTGGC CATCAGCTGC
GGCATGAGCT CGGCAGCCAT CGTCGCCGGC AACCCCGTGC TTTACAAACC CGCCGGACCG
TCCTCCGTGA TCGGCTTCAC CCTGTCAGAA ATCTTCCGCA AGGCCGGGCT GCCTGCAGGC
GTGTTCAATT ATGTACCGGG CCGGGGCTCG GTCATGGGCG ACTACCTGGT CGAACACCCC
GACGTGGCCC TCATCGCCTT TACCGGATCC ATGGAGGTCG GCCACCGCAT CATAGGCAAA
GCCTCCGTGG TTCATCCCGG CCAGAAGCAG ATCAAAAAGG TCATCGCGGA GCTTGGCGGC
AAGAACGCCA TCATCATCGA TGACGACGCG GATCTCGACG AGGCCATCAA GGAAGTCCTG
CACTCGGCCT TTGCCTTCCA GGGACAGAAA TGCTCGGCCT GCTCCCGGGT CATCGTGGTC
GAGCCCATCT ACGCCAAATT CATCGAACGT CTGGTGGAAG GCGCCAGGTC GCTGGCCATC
GGGCCCGCCG AGGATCCGAC CTACTTCATG GGACCGGTGG TGGACGACAA GGCCCAGCAG
AACGTGCTCA AGTACATCGA CATCGCCAAG AGCGAGGGCA CGGTCCTGTA CTCAAGCCCT
GTCCCGGCCG GCGGTTATTA CGCGCCCCTG ACCATCGTCG AAGGCATCAC CCCGGAGCAC
CGCATCGCCC AGGAGGAAGT CTTCGGTCCG GTCCTTTCGG TCATGAAGGT CAAAAACTTC
GATCAGGCCA TGGAGTGGGC CAACTCCACG CGCTACTCCC TGACCGGGGC CGTGTTCTCG
CGCAGCCCCA AACACCTCGA AAAAGCCCGG GAGCAGTTCA ACGTCGGCAA CCTGTACCTG
AACCGCGGTT CCACCGGCGC GCTGGTCGAG CGCCATCCCT TCGGCGGATT CAACATGTCC
GGAGTGGGCT CCAAGGCAGG CGGTCCGGAC TACCTGCTGC AGTTCATGGA CCCCAGGCTG
GTCTGCGAGA ACACCATGCG CCGAGGCTTC GCGCCTATCG AAGAAGACGA CGACTGGATC
ATCTAA
|
|---|
| Protein sequence | MDSLVLDKKI SDRGKEFFAS ISGEAPSIFN KGWWTGKVMD WSMKNENFKI QLFRFVDVLP
YLNTSDSLTR HIDEYFAGDD QDVPKVLKMG AGVMGTGLGG KLAAGLVAKA IRSNIEGMAK
QFIIGENTPD AMKNLKKIRK DGFAFTVDIL GEASVSEIES EAYLKEYMEL LDALKKEHAS
WAGLGGKDLD WGHAPKVNIS VKPTALFSQA SPKDFEGSVQ GIEKRLAAIL RKVKEMNGFM
RIDMEQYKFK DITLEVYRRL RSSEEFRDYP HLGIVLQAYL KDTDQDLADL LAWARAEKLP
ISVRLVKGAY WDSETVIAKQ NGWDIPVWTI KAESDAAYER QAKMILENHD ICHFGCASHN
IRTIAAVMET AKALNVPDER YEFQVLYGMA EPVRKGLLKV AKRVRLYAPY GDLLPGMAYL
VRRLLENTAN ESFLRQSFAE EAEVERLMEN PAVTVEREKA QRKPKAEAEV AGLARFENEP
FADFTQESVR QAFMDAVAAV RAQLGKEYPL VIGGQEVRTA DTLQSVNPAN PSEIIGTICQ
ASTKEIDLAI EAAKKAAPAW KALSPEERAG YLLKAAEIAR KEIFTLSAWQ TLEVGKQFDQ
AQADVAEAID FMEYYAREMI RFGKPQRMGR APGEMSQLIY QPKGIAAVIA PWNFPLAISC
GMSSAAIVAG NPVLYKPAGP SSVIGFTLSE IFRKAGLPAG VFNYVPGRGS VMGDYLVEHP
DVALIAFTGS MEVGHRIIGK ASVVHPGQKQ IKKVIAELGG KNAIIIDDDA DLDEAIKEVL
HSAFAFQGQK CSACSRVIVV EPIYAKFIER LVEGARSLAI GPAEDPTYFM GPVVDDKAQQ
NVLKYIDIAK SEGTVLYSSP VPAGGYYAPL TIVEGITPEH RIAQEEVFGP VLSVMKVKNF
DQAMEWANST RYSLTGAVFS RSPKHLEKAR EQFNVGNLYL NRGSTGALVE RHPFGGFNMS
GVGSKAGGPD YLLQFMDPRL VCENTMRRGF APIEEDDDWI I
|
|---|
| |