Gene Dbac_3179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_3179 
Symbol 
ID8378875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand- 
Start bp3597480 
End bp3598553 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content61% 
IMG OID645002415 
Productthiamine biosynthesis protein 
Protein accessionYP_003159670 
Protein GI256830942 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACTT TTGACGCGCT CTCACTTTTT TCCGGCGGTC TGGACAGCAT CCTGTCCAGC 
AAGCTGATGC AAAGCCTCGG ACACAAGGTT CTCGGGCTGC ATTTTATCAG CCCTTTTTTC 
GGCAAGCCGG ACCAGGTGCC CGAATGGGAA CGGGAATACG GTATTCCCAT TACCATCATC 
GACGTCGGTC AGGAGTTCGT GGACCTCATG GCCGCATTTC CGCCCCATGG CTTCGGCAAG 
GTCCTGAACC CCTGTGTCGA CTGCAAGATC CTCATGCTGC GTCGGGCCAA GGAACTTCTG 
CCGGTCTACG GCGCCTCGTA TCTCATCTCC GGCGAGGTCC TCGGGCAGCG CCCCATGTCC 
CAACGCGCCG ACACCCTGAA CATCATCCGC AACGACGCCG ATGTGCGCGA CCTGCTGTTG 
CGCCCCTTAA GCGCGGGACT ACTCCCCATC ACGCCCATGG AGGAGTCCGG CCTGGTCGAT 
CGCGCCAAAC TGCGGTCCCT GGTCGGACGC GGACGCAAAG GGCAATACGC CCTGGCCAAG 
GAACTGGGCG TCACCAAAAT CCCCACTCAG GCCGGCGGGT GTCGCCTGGG AGAACGGGAA 
TCCGCCCGGC GCTACTGGCC CATATTGCGG GCCTTTCCGA AGCCGCTCAG CCCATATTTC 
GATCTGGCCA ACGTCGGCCG CCAGCTTTGG CGCAGGGAGG CGGACGCGGT CACCGACCAC 
TGGATGGTCA TGGGCCGGGA TCACAAGGAC AACCAAAAAC TCTTGAAGCT GGTCAGCCCC 
GAGCAGTACG TCTTTGTGCT CAAAAATTTC CCCGGCCCCA ATGCTGTCGG CGTCCCGATC 
CCCGGACAGG ACTGGACGGA GGAGATCCTG GCCGAGGCGG CGGCCTGCCT GGCATCCTTT 
TCCCCCAAGG CCAGAAAACA CGGGGATTTG GTGGACGTAT CCATTGCGCG GCACGGCCTG 
GAACGCATCA TTTCAGTCCG CCCCGACATG GCCCACGGTT TCGAGGATAA TTTGACCTGG 
CCCCAGACCA GGGCGCAGCA AAAAATTTGG GAGCGCAAGC TGGCTGAAGT CTGA
 
Protein sequence
MNTFDALSLF SGGLDSILSS KLMQSLGHKV LGLHFISPFF GKPDQVPEWE REYGIPITII 
DVGQEFVDLM AAFPPHGFGK VLNPCVDCKI LMLRRAKELL PVYGASYLIS GEVLGQRPMS 
QRADTLNIIR NDADVRDLLL RPLSAGLLPI TPMEESGLVD RAKLRSLVGR GRKGQYALAK 
ELGVTKIPTQ AGGCRLGERE SARRYWPILR AFPKPLSPYF DLANVGRQLW RREADAVTDH 
WMVMGRDHKD NQKLLKLVSP EQYVFVLKNF PGPNAVGVPI PGQDWTEEIL AEAAACLASF 
SPKARKHGDL VDVSIARHGL ERIISVRPDM AHGFEDNLTW PQTRAQQKIW ERKLAEV