Gene Dbac_3117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_3117 
Symbol 
ID8378812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp3527790 
End bp3530024 
Gene Length2235 bp 
Protein Length744 aa 
Translation table11 
GC content58% 
IMG OID645002352 
Productribonucleotide-diphosphate reductase subunit alpha 
Protein accessionYP_003159608 
Protein GI256830880 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0209] Ribonucleotide reductase, alpha subunit 
TIGRFAM ID[TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGTTA TGAAAATGCC GGCTGATCTG CCCGACGTGA GTCTCAATTC CAACGCCGAG 
TTGGTGCTCA AAAAACGTTA CCAGCGCAAA GGACTGGACG GAACGCCCAT TGAGACAGCG
AAGGAAATGT TCTGGAGAGT GGCGGCAAGC ATAGCATCCA TGGAAAAGAA CTACCCGTCT
TCGCCTTTCA AACCCAAGGA TCTGGCCCGC ACGTTTTACT CCTTGATGAC CGAGTACGAT
TTTCTGCCCA ATTCCCCGAC CCTCATGAAC GCCGGCACGG AACTGGGACA ACTGGCGGCC
TGCTTCGTAT TGCCTGTCGG CGACTCCATG GACGAGATCT TCGACGCGGT GAAGAACGCG
GCGCTGATCC ACAAGTCCGG CGGCGGCACG GGCTTTTCCT TCACCCGTCT GCGTCCCAAG
GACAGCCGGG TCGGTTCCAC CGGCGGCGTT GCTTCGGGCC CCATCTCCTT TCTCAAGATT
TTCAACACGG CCACCGAGCA GGTCAAACAG GGTGGAACCA GGCGCGGAGC CAACATGGGC
ATCCTGCGCG TCGACCATCC CGATATCCTG GAATTCATCC GGGCCAAGGA ACGCGAGGGG
GACCTCAATA ATTTCAACCT GTCCGTGGCC CTGACCGAAA AATTCATGCA GGCCGTGGAG
AATGACGAGG AATATCCCCT TGTCGCCCCC CAGTCGCAGG AAGTCATCGA AAAGCTCAAA
GCCCGCGAAG TCTTCGAGCT CCTGGTGCGC AAGGCCTGGG AGAGCGGAGA TCCGGGAATC
ATCTTCATCG ACCGCATCAA CCGCGACAAC CCCAATCCGG ACCAGGGCGA GATCGAGAGC
ACCAACCCTT GCGGCGAACA GCCCCTGCTG CCTTACGAGG CCTGCAACCT CGGTTCCATC
AATCTGGCCC GTTTCGTGCG CGAAAAGGAC GAGGGCGTTG AAATCGACTG GGACAGGCTG
CGTGAAGTGG TGCATTTGAG CGTACGCTTT CTGGACAACG TCATCGACGC TTCGGAATAC
CCGCTGGACC GCATCACGGA GACTGTGCGC AAGAACAGAA AGATCGGGCT TGGAGTAATG
GGCTGGGCCG ATCTTCTGTA CCAGTTGGGC CTGCCCTACG ACAGCCGCCG GGCCATCGTG
CTCGCCGAGC AGATGATGAA TTTCATCCAA AAGGAAGCCA GATCCGCTTC CAAGGAACTG
GCCAAGGAGC GTGGTCCCTT TCCGTCCTAC GAGACCTCCA TCTACAAGGA ACAGAATCTG
GGGCCTTACC GCCATGCCAC GACCACGACC ATTGCCCCCA CAGGCACCCT GTCCATCATC
GCCGGATGTT CCTCCGGGGT GGAGCCTCTT TTCGCCCTGT GCTTCGTGCG TCAGGTCATG
GACGGCGAAA AGCTGACCGA GGCCAACAGC TTTTTCGTCA AAGCCCTGCA CGACCAGGGA
TGCTATTCCG AAAAGCTCAT GGCCGAGGTG ATTGAAAAAG GCTCGGTCAA GAACATGGAT
TTTCTCCCTG AAGAGCTCAG GAACGTCTAC GTGACTTCCA TGGACATCGA GCCGCAGTGG
CATCTGAAGA TGCAGGCGGC CTTCCAGAAG CACACCGACA ATGCCGTCTC CAAAACGGTC
AACCTGCCCA ATTCCGCTAC CCAGGAAGAC ATCTACCAGA TCTATTGGAT GGCCTACGAA
GAAGGCTGCA AAGGCGTCAC GGTTTACCGC GACGGCTGCA AGAGCGTGCA GGTCCTGTGC
ACCGGAGATG GCAATAAGGA AGAGAAGAAG AGTGACGAGT GCCGCCCCAT GGACCGGCCC
GACATCGTCT ACGGATTCAC GCAGAAGGTC CGCACGGGCC TTGGCGACCT GTATCTGACG
GTCAACGAGG TCAACGGCAA GCCTTTCGAG GTTTTCACCA CCATCGGCCG CTCGGGCAGA
TCCATCACCG CCAAGGCCGA AGCCATTGGC CGGCTGGTTT CCCTGGCGCT TCGCTCGGGC
GTGCATGTTC GTGAAATAGT CAAGCAGCTC AAAGGGATCG GAGGGGAGCA TCCGGTTTTT
CAGAAAAAGG GCATGCTCCT TTCCATTCCC GATGCGGTAT CCTGGGTGCT CGAAAACAAG
TATCTGCAAG GTACCACTCC GAGCAGTTCC TACAAATCCC TGTCCAAGAC CGAATGCCCC
GAATGCATGA CGGAGCTGGT CTTTCAGGAA GGGTGCTTTG TCTGTCCGTC CTGCGGCTTC
ACCAAGTGTG GATGA
 
Protein sequence
MDVMKMPADL PDVSLNSNAE LVLKKRYQRK GLDGTPIETA KEMFWRVAAS IASMEKNYPS 
SPFKPKDLAR TFYSLMTEYD FLPNSPTLMN AGTELGQLAA CFVLPVGDSM DEIFDAVKNA
ALIHKSGGGT GFSFTRLRPK DSRVGSTGGV ASGPISFLKI FNTATEQVKQ GGTRRGANMG
ILRVDHPDIL EFIRAKEREG DLNNFNLSVA LTEKFMQAVE NDEEYPLVAP QSQEVIEKLK
AREVFELLVR KAWESGDPGI IFIDRINRDN PNPDQGEIES TNPCGEQPLL PYEACNLGSI
NLARFVREKD EGVEIDWDRL REVVHLSVRF LDNVIDASEY PLDRITETVR KNRKIGLGVM
GWADLLYQLG LPYDSRRAIV LAEQMMNFIQ KEARSASKEL AKERGPFPSY ETSIYKEQNL
GPYRHATTTT IAPTGTLSII AGCSSGVEPL FALCFVRQVM DGEKLTEANS FFVKALHDQG
CYSEKLMAEV IEKGSVKNMD FLPEELRNVY VTSMDIEPQW HLKMQAAFQK HTDNAVSKTV
NLPNSATQED IYQIYWMAYE EGCKGVTVYR DGCKSVQVLC TGDGNKEEKK SDECRPMDRP
DIVYGFTQKV RTGLGDLYLT VNEVNGKPFE VFTTIGRSGR SITAKAEAIG RLVSLALRSG
VHVREIVKQL KGIGGEHPVF QKKGMLLSIP DAVSWVLENK YLQGTTPSSS YKSLSKTECP
ECMTELVFQE GCFVCPSCGF TKCG