Gene Dbac_2824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_2824 
Symbol 
ID8378515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp3202013 
End bp3202966 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content59% 
IMG OID645002055 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_003159315 
Protein GI256830587 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATTG CAACACTGAA AAAAACCATC CCCGTCCTTG TCCTTCTACT CGCCCTCTTC 
ATCGCTCCGG CTCAGGCCAG CCGCGACGAC GTGCGCATCA CCAGCGTCGG GTGGACCGAT
GTCACCGTGA CCAGCGAGCT GGCCGTGGCC ATTTTGCAGA GCCTTGGCTA CTCCTCCTCC
AACATGATGA CCTCCCTGCC CATCTGCTAT CAGGCCCTGG CCACGAACGA GGCCGACGTG
TTCCTCGGCA ACTGGATGCC GTCCATGGAA AGCGTAGCGC GTCCCCATTT CGATTCCGGC
AACGTCATCC AGCTTGTGCC GAACATGACC GGAGCCAAAT ACACCCTGGC CGTGCCGAGC
TACGTGGCCG CAGGCGGCCT CAAGGATTTC AAGGACATCG CCAAGTACGG CGACAAGCTG
GAATGGAAGA TCTACGGCAT CGAGGAAGGT AACGACGGCA ATGACATCAT CGAATCCATG
ATCGACAAGA ACATGTTCGG CCTCGGCAAG TTCGAGCTGG TCGCCTCCAG CGAATCCGGC
ATGCTGGCCC AGGTGCAATC CTTCATGCGT GAAAAGAAAT GGATCGTCTT TCTGGGATGG
TCCCCGCACA GCATGAACGA AAAGATCGAC ATGACGTACC TGACGGGCAG CACGGACGAC
ACCTTCGGAC CGAACGACGG CACGGCCACG GTCTACACCA ACGTGCGCAA GGGACTGCCG
CAGGACATGC CCAACGTAAC CCGTTTTCTG CAGAACTACG TCGTGCCCGT AACCATGATG
AACTCCATCA TGGTCACCAT GCACGAAAAG CCTGAAATGA AAGCCCGCGA TGCGGCCCTG
GACTGGGTGA CCGCGCATCC GGACATGGCC GCCACATGGC TTGAAAGCGT GACCACCAAG
GAAGGCAAGC CCGGCCTGCC CGCCTTCCTG AAGCTGCTTG AATCCCGCAA GTAA
 
Protein sequence
MTIATLKKTI PVLVLLLALF IAPAQASRDD VRITSVGWTD VTVTSELAVA ILQSLGYSSS 
NMMTSLPICY QALATNEADV FLGNWMPSME SVARPHFDSG NVIQLVPNMT GAKYTLAVPS
YVAAGGLKDF KDIAKYGDKL EWKIYGIEEG NDGNDIIESM IDKNMFGLGK FELVASSESG
MLAQVQSFMR EKKWIVFLGW SPHSMNEKID MTYLTGSTDD TFGPNDGTAT VYTNVRKGLP
QDMPNVTRFL QNYVVPVTMM NSIMVTMHEK PEMKARDAAL DWVTAHPDMA ATWLESVTTK
EGKPGLPAFL KLLESRK