| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2741 |
|---|
| Symbol | |
|---|
| ID | 8378425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 3129233 |
|---|
| End bp | 3131473 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645001966 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_003159233 |
|---|
| Protein GI | 256830505 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.123661 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG ACTTAATCAT CGTCGAATCA CCCGCCAAAA TCAAAACCAT CAAAAAGTTT
CTGGGCGGCG GGTATGAAGT GGAAGCATCC GTGGGACACG TGCGTGACCT GCCGACCAAA
ACCCTGGGCG TGGACGAGGG CAATGACTTT GCCCCGGACT ATCAGATCAT CCCCGGCAAG
GCCAAGGTCG TCAGCAAACT CAAATCCGCG GCCAAGGCTG CGGACACGGT CTATCTGGCA
CCCGACCCGG ACCGTGAAGG GGAGGCCATC GCTTGGCACG TGGCCGAAGT CATCCGGACT
TCCAATCCGA ATGTGAAACG CATTCAGTTC AACGAGATCA CGGCCAAGGC GGTCAAAGAA
GCCTTGGCCA ACCCCACGGA ACTGCGCAAG CCCCTCTTCG ATTCCCAGCA GGCCAGACGC
ATTCTGGATC GCCTGGTGGG CTACAAAATT TCTCCGCTGC TCTGGAAAAA GGTCAAACGC
GGCCTGTCCG CCGGCCGGGT CCAATCCGTG GCCCTGCGTC TCATCGTGGA CCGCGAACGT
GAACGCCAGG CCTTTGTTTC CGAAGAATAC TGGGTTTTCA AGATCACGGT CCAGGGCGAG
ACCCCTCCGC CCTTTGACGC CGACCTGTGG AAAGTGGACG GGGAAAAACC CGTCATCGGC
GACGAAAAGA CGGCCCTGGC CCTGGAAAGC CGCGTCGACG GACAGTCTTA TGTGGTACGG
GACATCGTCG AGAAGGAACG CCAGCGCCAC CCTCGTCCGC CGTTCATCAC CTCCACCCTG
CAGCAGGATG CCAGCAACAA GCTCGGCTTC AACGCCAAAC GGACCATGTC CGTGGCTCAG
CGCCTCTACG AGGGCGTAGA GCTTGGCGAA CGCGGAACCA CGGCACTCAT CACCTACATG
CGTACCGACT CGGTGCGCAT TTCTGATGAG GCCAAGGACG GCGCCCGCGA GTGGATCACC
CGCACCCTGG GGCCGGAATT CTATCCCAAG GAGCCCCGGG TCTACAAAAG CAAGGGCAGC
GCCCAGGACG CGCACGAAGC CATTCGCCCC GTCGATCCGA GCCTGACTCC CGATTCCATC
AAAAACAACC TGCCGCCCGA ACAGTACAAG CTCTACCGGC TCATCTGGGA GCGCTTCATG
GCCTCGCAGA TGGCTTCCGC CCGCTTCTGG GATACCGTGG CCACCATTGA AAGCGGCCCG
GCCCAATGGC GCGCCAAAGG CGAGAGACTC GTCTTCCCCG GTTTTCTGCA GATCTGGCCG
CAATCCTCGG ACAACCAGAG CGCCTTGCTG CCGAAACTTG TGACCGGACA GGAACTGCGT
CTGGAGAAGC TGCACAAGGA ACAGAAATTC ACCCAGCCCC CGGCTCGCTT CTCGGAAGCG
TCCCTGGTGC ACAAGCTCGA AGAGCTGGGC ATCGGCCGAC CCTCGACCTA TGCGGCCATC
ATCTCCACCC TGACAGAGCG CGACTACGTC CACATCGAGG AAAAACATTT CCAGCCCACG
GACCTGGGCG TCATTGTCTG CGACCTTCTG GTGGAACATT TCGCCCACCT CATGGACGCC
GGCTTCACGG CGCGCATGGA AGAAAGCCTC GACCATGTCG CCGAGGGCGA AACCGACTGG
GTCGCCCTGC TCCGGGATTT CACCCTGGAC TTCAACCCGA CCCTGGACAA GGCGCGGGAA
AACATGACCC AGGTCAAGGC CGGCATGGAC ACGGGACTGT CCTGTCCCCA ATGCGAGGAT
GGCAGGCTTG TGGTCAAATT CGGCAAGAAC GGAACTTTTC TGGGCTGCGC CAACTATCCG
GCCTGTTCCT TTACCAGCAA CTACATCCGC AACAACGCCG GGGAAATCGA GCTGGTCAAG
GAAGAAGCGC CCGAAGAGCT CGGGCCCTGC CCCAAATGCG AAGACGGTCG GTTGGTGGTC
AAAAAGACCA AGACCGGCGG CAGATTTGTA GCCTGCTCCA ATTATCCCGC CTGCCGCCAC
ACCAAATCCG TGAGTACCGG CGTGGCCTGC CCCAAGGACG GCTGCGACGG CGAACTGGTC
GAAAAAACCA GCCGCCGCGG GAAGCCCTTC TATTCCTGCA GCAAATATCC CAAATGCGAT
TACGCGGTCT GGGATTTCCC CGTGGCCAAG CCCTGTCCGC TGTGCGAATC AAAAATCCTG
GTGCGCAAAG AGACCAAGGC CAGGGGAGCG CACCTGGCCT GTCCGGTCAA GGATTGCGGA
TACTGGGAAA AATTGGACTA G
|
|---|
| Protein sequence | MGKDLIIVES PAKIKTIKKF LGGGYEVEAS VGHVRDLPTK TLGVDEGNDF APDYQIIPGK
AKVVSKLKSA AKAADTVYLA PDPDREGEAI AWHVAEVIRT SNPNVKRIQF NEITAKAVKE
ALANPTELRK PLFDSQQARR ILDRLVGYKI SPLLWKKVKR GLSAGRVQSV ALRLIVDRER
ERQAFVSEEY WVFKITVQGE TPPPFDADLW KVDGEKPVIG DEKTALALES RVDGQSYVVR
DIVEKERQRH PRPPFITSTL QQDASNKLGF NAKRTMSVAQ RLYEGVELGE RGTTALITYM
RTDSVRISDE AKDGAREWIT RTLGPEFYPK EPRVYKSKGS AQDAHEAIRP VDPSLTPDSI
KNNLPPEQYK LYRLIWERFM ASQMASARFW DTVATIESGP AQWRAKGERL VFPGFLQIWP
QSSDNQSALL PKLVTGQELR LEKLHKEQKF TQPPARFSEA SLVHKLEELG IGRPSTYAAI
ISTLTERDYV HIEEKHFQPT DLGVIVCDLL VEHFAHLMDA GFTARMEESL DHVAEGETDW
VALLRDFTLD FNPTLDKARE NMTQVKAGMD TGLSCPQCED GRLVVKFGKN GTFLGCANYP
ACSFTSNYIR NNAGEIELVK EEAPEELGPC PKCEDGRLVV KKTKTGGRFV ACSNYPACRH
TKSVSTGVAC PKDGCDGELV EKTSRRGKPF YSCSKYPKCD YAVWDFPVAK PCPLCESKIL
VRKETKARGA HLACPVKDCG YWEKLD
|
|---|
| |