| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2016 |
|---|
| Symbol | |
|---|
| ID | 8377691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 2317529 |
|---|
| End bp | 2318971 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645001241 |
|---|
| Product | type I secretion membrane fusion protein, HlyD family |
|---|
| Protein accession | YP_003158518 |
|---|
| Protein GI | 256829790 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.337577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCGC AAAACGATCA GTCCGGTTTT CAGGCAGAAG ATACGAACGC CACTGCCGCG
GACAGCTCGC ATGCTTCTTC TCCCAGGAAG ATTTTCAAAA CAGGCCGGTC CGGATCGAAA
AGCATCCGAG GCGAAGGAGG CGGATTCGTG AACGACTTGC GCGAACTCGA TTCCTCCCGT
CAGTTTGCGG CCAATGTTCT CCTGATTGCG GTGGCCCTTG TTTTTATAGT CGCCGTTTCG
TGGGCAGCCT ATGCACCGCT TGATGAAGTG GTGCGGGGTA TAGGCAAGGT CATCCCGTCA
TCCGAAATAA AGCGCATTCA AAATTTCGAG GGGGGGATAG TCAAAGAGAT TTTGGTGCGG
GAAGGGGATC TGGTCGGCAC AGGGCAACTG CTCATTTTGC TTGATCAGAT TCAGATGGAG
TCCAGGTATC GGGAGCAGCA GTCGGGCTTC CTTGATTCGA CCCTCGCCAT CGCCCGGTTG
GAAGCGGAAC TGAACGCCAG GGAAGACATA GATTTTCCGC CAGATATTTT GAGCCAAAAG
CCGCACCTTG TCGAAAACCA GCGCCAGCTT TTGCGGTCTC GAAACGACAG TCGCCGTGCC
GCGTTGAGCG TACTTGAGCG TGAGCGGGAG CAGCGCTCGC AGGAGTTCAA AGAGTTCAAG
AACAGGATGG ACTTTCAGCT CAGAACGCAT GCGCTTCTGT TGAAAGAAGT GGACATGATC
CGCAGCATGA CGGCCAAGGG CGCGGCTTCG GACATGGACC TCTTGCGAGC GCAACGGGAA
CTTTCCGATC TTTCCGGCGA GATTGCCGAG TCGCGTCTGG CAATTCCGAA GGCGGCAGCG
GCTGTCGAGG GCGCAAACCA TCGCATCGAA GAAGAGAAAG GCAAGCAGCG TTCCGCCATA
TTGGACGAGT TGAGTAAGAT CCGCACGGAA ATGGAGGGCG TGAAAGAGAC CTTGCCAGCG
TTGGAAGACA AAATGGACCG CACGAGTGTC CGGTCTCCGG TAGATGGCAC GGTGAAGCGG
GTTTTTGTGA CCACAATCGG AGAAGCCGTT GGGGCGGGCA AGGAAATGCT TGAAATCGTA
CCGCAGGAAG ACACTCTTTT GATAGAGGCC AAGGTCCTGC CGCAGGATAT CGCCTTTCTG
TACCCCGGTC AGGCTGCTGA GGTGAAAATC ACGGCCTATG ACTTTTCTAT CTATGGAAGC
ATGCCAGGCG TCGTGGAGCA CATAAGCGCC GATGCCATAA CAGACGAGCA GGAAAATCTG
AGCTACTATC TTATCAAGGT GCGTACGGAC AAAGCGTCCC TGAAAAGCCG GGATGGAAAA
GATCTTCCGA TCATAGCCGG CATGGTGGCG GAAGTGGATG TGCTCACTGG CAAGAAGACC
GTGCTGCAGT ATCTTCTCAA GCCTATCCTC AAATCCAAGT CAGGTACGCT GAACGAGCAA
TGA
|
|---|
| Protein sequence | MSSQNDQSGF QAEDTNATAA DSSHASSPRK IFKTGRSGSK SIRGEGGGFV NDLRELDSSR
QFAANVLLIA VALVFIVAVS WAAYAPLDEV VRGIGKVIPS SEIKRIQNFE GGIVKEILVR
EGDLVGTGQL LILLDQIQME SRYREQQSGF LDSTLAIARL EAELNAREDI DFPPDILSQK
PHLVENQRQL LRSRNDSRRA ALSVLERERE QRSQEFKEFK NRMDFQLRTH ALLLKEVDMI
RSMTAKGAAS DMDLLRAQRE LSDLSGEIAE SRLAIPKAAA AVEGANHRIE EEKGKQRSAI
LDELSKIRTE MEGVKETLPA LEDKMDRTSV RSPVDGTVKR VFVTTIGEAV GAGKEMLEIV
PQEDTLLIEA KVLPQDIAFL YPGQAAEVKI TAYDFSIYGS MPGVVEHISA DAITDEQENL
SYYLIKVRTD KASLKSRDGK DLPIIAGMVA EVDVLTGKKT VLQYLLKPIL KSKSGTLNEQ
|
|---|
| |