| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1878 |
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| Symbol | |
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| ID | 8377550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 2156094 |
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| End bp | 2157521 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645001106 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003158385 |
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| Protein GI | 256829657 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.660542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGG CACAGATTCA AATCGTTTGC ATGTATCTCG TGATCTCTCT TCTTGTCTGT
GCCGTTCCGG CCATTTCCGG TGCGCAGTCA GTCGCGTCCC CGAATGCGGA GCCCTCCGTC
ACTGCTTCCG GCTCCGACGG CGTCAAGTCG ATTCTGGACG ACACGGCGGC CCCTGGCGGT
CTCACGCTTC AGGCGGCCCT TCAATCGGCC ATCAACGACA ACCCCACTTT TCTGAGCCGC
AAGCATGCCT ATTCGTCGTC GCACGAAGCG TATCTCAAAT CGTTCGGCGC CCTGCTGCCG
CAAGTCGATT TCGTGGCCAA GGGCGGGTAT CAGGTGGTGC GCAACGATAC GACCATCGCC
AGCATGTCCG GCGAGCAGGG CGACACGTGG ACGGACGATA TGCGCGTGGT CATGTCGCAG
CTGATTTTCG ACGGCGGCCT GACTTCCGCC AAGGTCGAGG CCGACAAGCA CCTGTCGCAT
TCCAGAAAGG AAGAGCTTTT CAACACCGCC GAGGATGTCG GACTGACCGC GACGCAGCAC
TTCATGGAAG TCATCCGCAA TCGCGCCCTC ATCGAATTGT GCGAACGCAA CATTGCCGAA
CATGCGGCCA TTCTCGATCT CACCCGCATT CGCCTTGACA GCGGCGGCGG AACGCAGGTC
GACGTGAATC AGGCCGAGGC TTCCCTGGAT GAGGCCAGAT CTCGTCTGGT GCAGGCCAGG
CAGGGGCTGG AGGACGCCGA AGCGGGATAT CTGAAGGTTT TCGGAGCCAC GGCGGACAGG
CTGTCCATGC CCGAAAAGCC GATCGGAGCG ATTCCCCAGA GTCCGGAAGA CGGCGTGGCC
TTGGCCATGA ACGCGAATCG GGCCCTCAAA GCCGCGCATC TGGGCATCCT GCAAAAGGAA
AGCGAAGTTG TCTCGGCCAA GGGACGCCAT ATGCCCAAGC TTCACTTCAA GGCCTCCGGG
GGGCGCTCGG ACAATACCGG TGGATATTCC GAAAATTACC ATGACCTCTC CGCCATGCTC
CAGGTCTCCT TCAACCTCTA CAGTGGCGGG TCCGACGCGG CCGCCATTCG GGAGGCGAAG
AGTGAACGAC TGAAGGCGCT GGCGGAGACC GAAGAGGTCC GGCGCAAGGT GGAAGAGGAT
GTGCGCACTG CTTACAGTTT TCACAAGGCC ACCGGGGATC TGCTGCCCGT TCTGAGTAGC
CTGACCGACG AGAACGCCAG GGTCGTGGAC AGCTATGCTG ATCAGTTTCG CATGGGCAAG
AGGACTCTCC TGGATCTGGT GTCCGCGCAG AGAAGCCTGT TCAGTTCGCA GCAGGTGTAC
CTCAACGCCA TGACCGCGCA TACATTCTCG TACTACAGAA TCTGCATGCC CATCTCCGCG
CTCATGTCCA CGCTCAACGT GAGCATGGAT GTTCCTGAAC TGAAATAG
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| Protein sequence | MKLAQIQIVC MYLVISLLVC AVPAISGAQS VASPNAEPSV TASGSDGVKS ILDDTAAPGG
LTLQAALQSA INDNPTFLSR KHAYSSSHEA YLKSFGALLP QVDFVAKGGY QVVRNDTTIA
SMSGEQGDTW TDDMRVVMSQ LIFDGGLTSA KVEADKHLSH SRKEELFNTA EDVGLTATQH
FMEVIRNRAL IELCERNIAE HAAILDLTRI RLDSGGGTQV DVNQAEASLD EARSRLVQAR
QGLEDAEAGY LKVFGATADR LSMPEKPIGA IPQSPEDGVA LAMNANRALK AAHLGILQKE
SEVVSAKGRH MPKLHFKASG GRSDNTGGYS ENYHDLSAML QVSFNLYSGG SDAAAIREAK
SERLKALAET EEVRRKVEED VRTAYSFHKA TGDLLPVLSS LTDENARVVD SYADQFRMGK
RTLLDLVSAQ RSLFSSQQVY LNAMTAHTFS YYRICMPISA LMSTLNVSMD VPELK
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