| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1468 |
|---|
| Symbol | |
|---|
| ID | 8377133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 1658068 |
|---|
| End bp | 1659339 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645000692 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_003157978 |
|---|
| Protein GI | 256829250 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCATT TCCAATACAA GAACGGTCAA CTTCACGCCG AGGACATAGC CGTGGCCGAT
CTGGTCTACG AATACGGCAC ACCGCTCTAC ATCTATTCCG CGACGACCTT GAAGCGCCAC
TACAAGGCCT TTGACTCCGC TTTCGACGGC ATCGACCACC TGACCTGCTA CTCGGTCAAG
GCCAACTCCA ACCTGAGCTT CCTCAAGATT CTGGCCCAGG AAGGAGCCGG TACGGACATC
GTCTCCGGCG GCGAGCTTTT CCGGGCGCTC AGAGCCGGGG TGGACCCGAA AAAAATCGTC
TATTCGGGAG TGGGCAAGAA GACCGTGGAG ATCCAGGAAG CCCTCTTTGC CGACATACTC
ATGTTCAATG TGGAGTCCGT GCAGGAACTT GAACGCATCA ACGACGTGGC CGGCGGCGTG
GACAAGGTCG CGCGGGTCAG CCTGCGCATC AACCCCGACG TGGACCCCAA GACCCACCCC
TATGTCTCGA CCGGCCTCAA GGAGAACAAG TTCGGACTGT CCCGGGCCGA CGCCCTGAAA
GCCTACGCCC TGGCCCAGAG CCTGCCCAAT GTCGAACCCA TCGGCATGGA TTGTCATATC
GGCTCCCAGC TGACCCAGCT TTCTCCCTTT ATGGAAGCAC TGGAAAAGCT GAAAGAATTT
CATGGCCAGC TGGTGCAGAT GGGCATCAAG ATCAAGTATA TGGATCTGGG CGGTGGCCTC
GGGATCACCT ACAACGAGGA AGCCCCGCCG CATCCCGAGG AACTTGGCAA GGCCCTCATT
GAATCCCTGA AGGGGCTGGA TGTGACCCTC ATCCTTGAGC CCGGACGGGT CATCGCCGGA
AACACCGGCA TCCTGGTGAC CGAAGTGCAG TACACCAAGA CCAACGAGGA CAAGACGTTC
GTCATTGTCG ACGCGGCCAT GAACGATCTG GTTCGCCCTT CCCTCTATGG CTCCTACCAT
CGCATCGCTT CGGTGCGTGA AGGAAACGGC GAGGAGATGA CCGCCGATGT GGTCGGCCCC
ATCTGCGAGT CCGGAGATTT TCTGGCCAAG AACCGCACCT TCCCCAAGGT CGCCCAGGGA
GACCTGCTGG CCGCCTTCTC GGCCGGGGCC TATGGGTTCG TCATGTCCTC GCAGTACAAT
TCCAGAGCAC GCGCCGCCGA AATCATGGTC GAGGGCGACA AGCACGTGCT CGTGCGCAAG
CGCGAGGTCT ACAATGATCT GGTGGCTTTG GAAGAGGATG GGCTGGCCTG CATCGGCAGA
TTGAAGAAAT AG
|
|---|
| Protein sequence | MHHFQYKNGQ LHAEDIAVAD LVYEYGTPLY IYSATTLKRH YKAFDSAFDG IDHLTCYSVK
ANSNLSFLKI LAQEGAGTDI VSGGELFRAL RAGVDPKKIV YSGVGKKTVE IQEALFADIL
MFNVESVQEL ERINDVAGGV DKVARVSLRI NPDVDPKTHP YVSTGLKENK FGLSRADALK
AYALAQSLPN VEPIGMDCHI GSQLTQLSPF MEALEKLKEF HGQLVQMGIK IKYMDLGGGL
GITYNEEAPP HPEELGKALI ESLKGLDVTL ILEPGRVIAG NTGILVTEVQ YTKTNEDKTF
VIVDAAMNDL VRPSLYGSYH RIASVREGNG EEMTADVVGP ICESGDFLAK NRTFPKVAQG
DLLAAFSAGA YGFVMSSQYN SRARAAEIMV EGDKHVLVRK REVYNDLVAL EEDGLACIGR
LKK
|
|---|
| |