Gene Dbac_1338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1338 
Symbol 
ID8377003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1479723 
End bp1481093 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content58% 
IMG OID645000566 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_003157852 
Protein GI256829124 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0728783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGCTGA TTATTTCCTT TTTGAATGGT ATTTCTATGG TTCGCTGCAT TAAAATTTTC 
CTCACGTTAC TTGCTTTCCT TTCTTTTTCA ACGCCTGCTG TCGCGACAGG TCTGCTGGAT
ATGTACAAGC AGGCCGTTCA GAATGATCCT ATATTTCAAA GCTATCAATT TCGGACCTTT
GTCGCCCAGG AAGGGAAACG GCAGGCTTTG GCCGCCATGC TGCCGACGGT GATGGCTACG
GGCAGCTATA TGCACAAGAG TCAGGACATC GTCAGCAGCG ACAACGAGGT CTACGCCTCG
GGCAGTTCCG AGTACGGGAC CACCGTCTAT GGCGTAAACC TGACTCAGCC TTTGTTCAAC
TGGGCCTCTT ACACCGGGTG GAAGCAGGCC GAGATCGTTC GCGTCCGCTC GGAGATGGAG
TTCGTTCTGG CCGGGCAGGA GCTGATCACC CGGGTCTCGG ACCTTTATTT CCAGGCACTG
GCCGCAAAGG ACAGGCTCGA CTACGCCCTC GTCGAGCAGG CCGCCGTCGA GAAACACTTC
GAACTGGCCC AGGGCCGTTC GGACATGGGC CTCATTCCCA TCACCGACCT GTACGACGCC
AAGGCGCGCC TCGCGGCCAC CGAGGCCCTG ACCATCGAGG CGCACAACAG GCTTGATGAC
GCCCTGCAAG CCTTGAGCGA AGTGACCGGC GCACCCGTGG ATGACCTCAT TCCTCTGGCA
CCAAACATCA AGCTGAAGAG GCCTGAGCCG CCGACCCTGG ATTCCTGGCT CGCTGGAGCC
CTCGAAGGGA ACCCGGCCAT CGAGCTCAGC AAAAAGGCCG TGGAAGTGGC CGAACTCGAA
GTGAAGCGCC AGAACGCCGC CCATTATCCT ACGCTGGACC TGGTCAGTTC CTTCGACAAC
GAGAACACCG AGGATTCGCT TTTCGGTGGA AGCAGCGAGG TCGACACGTA CAAGATCGGC
GTGCAGTTCA ACCTGCCCCT GTATCAGGGC GGTGAAGTCG CTTCCAAGAC CCGCTCTGCG
CGGCACGAGG TCGGCATCGC CCGGCAGGAT CTGGTCAAGC AGTCCCGGTC GGTTGCGCGC
AAGACCCGCT CGGCCTTTCT CGGCGTCGAC AGTTCACTGA AGAGGGTGGA CGCGCTCGCG
CAGTCCCTCG ACGCCAACAA ATTGGCTCTC GAAGCCAAGC AGGACGGCTA CATGTCCGGA
TTGTTCACCA GCCTTGGCGT CCTTGACGCC GAACGCGACC TGGCACTGGT CAGCATCGAC
CATGCCCAGG CACGCTATGA TTACATTCTC AATAGCCTGC GGCTCAAGCA GGCTGTTGGA
TCCCTGACCG AACAGGACTT GCTGGATCTG GAAAACTGGC TTGTGAAATA G
 
Protein sequence
MRLIISFLNG ISMVRCIKIF LTLLAFLSFS TPAVATGLLD MYKQAVQNDP IFQSYQFRTF 
VAQEGKRQAL AAMLPTVMAT GSYMHKSQDI VSSDNEVYAS GSSEYGTTVY GVNLTQPLFN
WASYTGWKQA EIVRVRSEME FVLAGQELIT RVSDLYFQAL AAKDRLDYAL VEQAAVEKHF
ELAQGRSDMG LIPITDLYDA KARLAATEAL TIEAHNRLDD ALQALSEVTG APVDDLIPLA
PNIKLKRPEP PTLDSWLAGA LEGNPAIELS KKAVEVAELE VKRQNAAHYP TLDLVSSFDN
ENTEDSLFGG SSEVDTYKIG VQFNLPLYQG GEVASKTRSA RHEVGIARQD LVKQSRSVAR
KTRSAFLGVD SSLKRVDALA QSLDANKLAL EAKQDGYMSG LFTSLGVLDA ERDLALVSID
HAQARYDYIL NSLRLKQAVG SLTEQDLLDL ENWLVK