Gene Dbac_1129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1129 
Symbol 
ID8376793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1236252 
End bp1236854 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content42% 
IMG OID645000362 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003157649 
Protein GI256828921 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACGTG TTTTTGTACT TTCTTTTCTT CTTGCCTTTC AGTTTTTGCT TTTGGCCGGG 
CAAAACGTTC AGGCTAAAGG CATTTACTAT ATGGTCAAGG AAGATGGAAC TCTTTGCATA
ACGGACATTC CTAATTCAAG AAAGTACAAG CCATACAAGT TTGAAAAGAC TATCAATTAT
ATTCGGAATG CAATAGTCGC ATTTAAGCGT GATCACAGAA GTGTAGAAGA AGTAAATGCC
ATAGTCTCTG GTTTGTGCTC TAAATATGCG GTTGATAAAA AACTTGTTAT GGCGGTGATT
GATGTTGAAT CCGGATTCAA TGCAGCCGCT GTTTCCACTG CAGGGGCTCA AGGCTTGATG
CAGATCATGC CTGAAACCGG AAGAGACCTT GATTTAGAGG ATCCTTTTGA TCCGTCGGAA
AATATCGATG CAGGAATCCG TTATTTGCGG TACCTGCTTG ATACATTTCC AGATAGGCGT
CTTGCTGTCG CGGCATATAA CGCAGGGCCA AATGCCGTAA AGAAATATGG GGGGATTCCC
CCCTACGCCG AAACTCAAAA TTATGTCGAA AAAGTTTGGG CTCGACTTCA ATATTATGAA
TAA
 
Protein sequence
MIRVFVLSFL LAFQFLLLAG QNVQAKGIYY MVKEDGTLCI TDIPNSRKYK PYKFEKTINY 
IRNAIVAFKR DHRSVEEVNA IVSGLCSKYA VDKKLVMAVI DVESGFNAAA VSTAGAQGLM
QIMPETGRDL DLEDPFDPSE NIDAGIRYLR YLLDTFPDRR LAVAAYNAGP NAVKKYGGIP
PYAETQNYVE KVWARLQYYE