| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0681 |
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| Symbol | secD |
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| ID | 8376335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 755454 |
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| End bp | 757049 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644999924 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003157220 |
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| Protein GI | 256828492 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.565803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAGTT TACGCTGGAG GGCATTGCTT GCCGCGTTCG TGATTTTTTT GGCCTTGATA
CATGTCCTGC CCTCAATACC TTCGGTTCGG AATTCCTCGC TGGGGGCGCT GCTGCCGGGC
GATGAAATCG GCCTTGGTCT TGACCTCAAA GGCGGGATCC ATCTGACTCT GGGCGTCGAC
CTTGATGCCG CCCTGTCCAA TGCCGTCACC AGCATTGGAC AGGATCTGCG TCTTGAAGCC
AGGGAAAAGA AAATTCTGGT CCTGCGTCCG CGTCTGCTGG ACAGCCGCAG GCTTGAATTC
ACGCTGCTCA AGCAGGAACA GCGCGCAGAA CTCGATGAGC TGCTTGGCAG CCGGTTTGCC
ACCATGCAGA TCATATCCGC CGAGGATGGC GGAAATGGGC AGCTGCGCTA CGTGCTCGGC
GTCACCCCGG ACTATGTGAA GTATCTCCAG GATCTGACCA TGGATCAGGC CCTCAAAACC
ATCCGCAACC GCATCGACCA GTTCGGCGTG GCCGAACCCG ATATCCGCAA GCAGCAGGGC
AACCGCATCA TCGTGCAGTT GCCTGGTCTT GACGATCCCA AGCGGGCCAT CAACATCATC
GGCCGCACCG CGCATCTGGA ATTCAAGCTG GTCGACGACG GCGCCGATGT CCAGGCCGCC
GTGGCCGGAA CGGTTCCGGC GGAGAGCGAG CTGGCCTACA TGCAGGACAA GCGGGGCGTC
TCCGAAGTCA AAACGCCCAT CGTGCTCAAA TCCGAGGTCG TGCTGACCGG CGAGTACATC
ACCGACGCCA ACGTGCAGTT CGATTCCTAC GGACAGGCGT ACGTGGGCAT GAATTTCAAT
GCACGCGGCT CCCGTATTTT CGAAGAAGTG ACCGGCGCGA ATATCAAAAA GCGTCTGGCC
ATCGTCCTTG ACGGCACGGT GCACTCGGCC CCCGTCATCC AGGACCGCAT CGGCGGCGGC
CGCGCATCCA TCACCGGCCA GTTCACCACC GAAGAGGCGC ATGACCTGGC CGTGGTGCTC
AGGGCCGGTT CCCTGCCCGC TCCGGTGAAC ATTCTCGAAG AACGCTCGGT CGGTCCTTCC
CTCGGACAGG AATCCATCGA TAAAGGCATG ATGGCCGCAT TGATCGGCGG CCTGATGGTG
GTGGTCTTCA TGTCGATTTA TTATCGCCGG GCCGGCCTCA TTGCGGCTTT TGAGATCATC
CTCGACGTTT TTCTCATCCT GGCCGGCCTT GCGGCATTTG GCGCCACGCT GACCCTGCCC
GGCATCGCGG GCATTATCCT GACGCTCGGC ATGGCGGTTG ATGCCAACGT GCTCATCTAC
GAACGCATCC GTGAAGAACT CCGGCACGGC GAATCCGTGG CCGCAGCGAT CAACAACGGC
TTCAGCCGGG CGACCCAGAC CATTATCGAC TCCAACGTGA CCACGATCAT CGCCGCAGTC
ATCCTGTACC AGTTTGGCAC GGGCCCGGTG CGCGGCTTCG CCGTCACCCT GACGCTCGGT
ATTCTGGCCT CCATGTTCAC GGCCATCTTC GTGTCCCGTA TCTTCTTCGA CTCCTGGCTG
GCCAGACGGC AGCCCGGCAC CCAACCGAGC ATTTAA
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| Protein sequence | MGSLRWRALL AAFVIFLALI HVLPSIPSVR NSSLGALLPG DEIGLGLDLK GGIHLTLGVD
LDAALSNAVT SIGQDLRLEA REKKILVLRP RLLDSRRLEF TLLKQEQRAE LDELLGSRFA
TMQIISAEDG GNGQLRYVLG VTPDYVKYLQ DLTMDQALKT IRNRIDQFGV AEPDIRKQQG
NRIIVQLPGL DDPKRAINII GRTAHLEFKL VDDGADVQAA VAGTVPAESE LAYMQDKRGV
SEVKTPIVLK SEVVLTGEYI TDANVQFDSY GQAYVGMNFN ARGSRIFEEV TGANIKKRLA
IVLDGTVHSA PVIQDRIGGG RASITGQFTT EEAHDLAVVL RAGSLPAPVN ILEERSVGPS
LGQESIDKGM MAALIGGLMV VVFMSIYYRR AGLIAAFEII LDVFLILAGL AAFGATLTLP
GIAGIILTLG MAVDANVLIY ERIREELRHG ESVAAAINNG FSRATQTIID SNVTTIIAAV
ILYQFGTGPV RGFAVTLTLG ILASMFTAIF VSRIFFDSWL ARRQPGTQPS I
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