| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0317 |
|---|
| Symbol | |
|---|
| ID | 8375965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 370453 |
|---|
| End bp | 371967 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644999558 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003156860 |
|---|
| Protein GI | 256828132 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.113715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTT CCGAGTATTA CAATACGGTC ATGGAGCTCA GCCACGGTAT CGTCATCACC
CTGGACGAAA AGGGGCTGAT CATCCATGGA AATTCGCGCT TCGAGGCGCT TTCCGGTTAC
GAGATAGGTT CCATCGCAGG CAAAGACTGG TTTGAGCTTT GCGTGGATGC CAAGCGCGCG
GACACGTCCA GGGAGATTTT CGCCGCGATC GTCGAGGCGG GGACGCTGGC GTTCATGAAA
GGCTCACTCA TGGCCAGGGA TGGGCGCAAG ATTTATATAG ATTGGAACAT GAAGCCTCTG
TTCGATTCCC ATCACAGTCT GGTCAGCGTG CTTTGCGTCG GCCAGGACGT CACGGCCCAT
GTGCTGCGCC AGCATGAACT GCTGCACGAA CACGGCCGGC TGGTGGCCCT CAACAAGGAA
TTGTCCTGCC TGCACGCCAT GAATCGCATC GTCTCGAACA TGGACAGCGA GCTGCCGGAC
ATCCTGCGCG AGATACTGGC CATCATCCCC CCTTCGTTCC AGCATCCCGA GTCCACGGGC
GTGCGTCTGC AGCTTGACGG CCAGGTGATC ATCAGCGGAA AGTTCACGCC CGATGCCTCG
TGCCGCCTGG AGCAGGAGGT GGTGGTGCAG AGGGTGAAGC GCGGGCATCT CAGCGTCAGC
CTGTCGGGCA GCGCCGAGGA TGGAACGGCC TATGCCTTTT TGCCTACCGA ATCCGAACTT
CTTGGCGCCC TGGCCAAGCA TGTGGGCTGG ATCATCGCCA AGCGCGAAGC CCTGTCGACC
AAGAGGAACC TCGAACGCCA ATTGCAGCAT GCCGACCGGC TGGCCAAGAT CGGCCAGTTC
GCGGCCGGAG TGGCCCATGA ATTGAACGAG CCCCTGGCCA ACATCCTCGG GTTCGCGCAG
CTGGCCGAAC AGACCCCGGG CCTTCCGGCG CAGGCCATGA AGGATCTGGA CAGCATCATC
AAGGCGGCCC TGCACAGCCG CGAGGTGATC AAGAAGCTGA TGATCTTCGG TCGTCAGGTG
CCGCTGCGAA AAACGCTCAT CGATTTGAAT CAGGTCATCC GTGATTCCCT GTACTTCATC
GAGATGAGCG CATCCCGGGG CAAGGTCGAG GTGCGCATGA ACCTGGCCGA AGGTCTGCCG
ACGATCATGG CCGACCCGCA GCATCTGAAG CAGGTCATCG TCAATCTGGT GGTCAACGGC
ATCCACGCCA TGCCCGGGGG CGGGGTCTTG ACCATAGAAA CCCTGTCCTT CAAGGATGAC
GTCTACCTCC TGGTCAGCGA CAGCGGAGTG GGCATGACCC CGGACGTTTT ACGGCAGATT
TTCAATCCGT TCTTCACGAC CAAGGACGTG GATCAAGGCA CGGGCCTTGG CCTTGCGGTG
GTGCACGGGA TCGTCCATGC ACACGGCGGG GTCATCGAAG TGGAGAGCGA ACCGGGCCGC
GGCACGCGCT TCGAGATCAC TTTTCCCTGC GGCGGGAGCG GGCGTGAAAT GAATCCGGCC
ATGGACGACA AATAA
|
|---|
| Protein sequence | MNLSEYYNTV MELSHGIVIT LDEKGLIIHG NSRFEALSGY EIGSIAGKDW FELCVDAKRA
DTSREIFAAI VEAGTLAFMK GSLMARDGRK IYIDWNMKPL FDSHHSLVSV LCVGQDVTAH
VLRQHELLHE HGRLVALNKE LSCLHAMNRI VSNMDSELPD ILREILAIIP PSFQHPESTG
VRLQLDGQVI ISGKFTPDAS CRLEQEVVVQ RVKRGHLSVS LSGSAEDGTA YAFLPTESEL
LGALAKHVGW IIAKREALST KRNLERQLQH ADRLAKIGQF AAGVAHELNE PLANILGFAQ
LAEQTPGLPA QAMKDLDSII KAALHSREVI KKLMIFGRQV PLRKTLIDLN QVIRDSLYFI
EMSASRGKVE VRMNLAEGLP TIMADPQHLK QVIVNLVVNG IHAMPGGGVL TIETLSFKDD
VYLLVSDSGV GMTPDVLRQI FNPFFTTKDV DQGTGLGLAV VHGIVHAHGG VIEVESEPGR
GTRFEITFPC GGSGREMNPA MDDK
|
|---|
| |