Gene Bfae_22280 details

Gene Information

• Locus tag: Bfae_22280
• ID: 8400774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Brachybacterium faecium DSM 4810
• Kingdom: Bacteria
• Replicon accession: NC_013172
• Strand: -
• Start bp: 2500614
• End bp: 2502533
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644998287
• Product: choline/carnitine/betaine transport
• Protein accession: YP_003155618
• Protein GI: 257069363
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCGGGTG TCTCGGTCGA GGATCAGAAG GTCCGCTACG GGATCGACGT GCCGATCCTG 
GTCGCCGTGG GGCTGCTCAT CATCGGTTTC GTGACCTGGG GGATCATCGC TCCGCAGCAG 
GTGTTCGACG TCTCCGGCGC GGCGCTGGGC TGGGTGATGC AGAACCTCGG CTGGCTGTTC 
AACGTGCTCG CGATCGCGAT GGTCCTGCTG CTGCTCGTCA TCGCGCTGTC GCGGTACGGC 
AAGATCCCGC TCGGCCTGGA CGGGGAGAAG CCCGAGTACG GCACCGCGTC CTGGGCGGCG 
ATGCTCTTCG CCGCCGGCAT CGGCATCGGC ATCATCTTCT TCGGCCCGTA CGAGCCGCTG 
ACCTACTACC TCGCGCCGAG GCCCGGCGCG CCCTACGACG CCGGCAGCAT GAACGCCATG 
AAGGGCGCGA TCGCGCAGTC CGCCCTGCAC TGGGGCGTCA ACGCCTGGGC CATCTACGCG 
ATCGTCGGGC TCTCGGCCGC CTACATCTCC TACCGCCGCG GCCGCGTGCC GCTGATGAGC 
GCGATCGTCT CGGGGCTGTG GGGCGGCAAC TCCTCGTCGA TCCCCAGCCG GATCATCGAC 
GCCCTCGCGA TCATCGCGAC GCTGTTCGGC ACCGCCGCCT CCCTCGGCAT CGGTGCTCTG 
CAGATCGCGC GCGGCGTGGA GATCGTCAGC GGGATCGGCC CCACCGGCAA CACCATCGCG 
ATGGTCATCA TCACCGTGCT GACCATCGGC ACGATCGCCT CCGCCGTCTC GGGCGTGGCG 
CGCGGGATCC GCTGGCTCTC CAACATCAAC ATGGTGCTCT CGGTGGGCCT GGCCCTCTTC 
TTCTTCGTGG TGGGACCCAC GGTGTTCCTG GTCAACATCA TCCCCGGCGC GATCACCGAG 
TACTTCGGCA CGCTGCCGGA CATGCTCGGC GCGAACATGG CCGAGGGCGA GGACATGCAG 
GCCTTCCTCT CGAGCTGGAC CACCTTCTAC TGGGCCTGGT GGGTGAGCTG GGCGCCCTTC 
GTGGGCGTGT TCACCGCCAA GATCTCCCGC GGCCGCACCA TCCGCCAGTT CGTGCTCGGC 
GTGCTGCTGA TCCCCTCCTC GATCATCGTG CTCGCCTTCG CCGTCCTCGG CGGCACCGCG 
ATCTGGCTGC AGCGCCGCGC GAGCGAGCTC GACGAGTTCG GCAACACCCT CGCCGTGGCG 
GATCCCGGCT CCGCGATCGC ACCCGACGGC ACCGTGGACT CGCTGCCGCT GCCCGCAGAG 
ATCTTCTACA CGGTGGTCGA GCAGCTCCCC GGCGGCGCGG TCATCTCCGC CCTCGTCATC 
GTGGTGCTCG CGATCTTCTT CATCACCACC GCGGATTCCG CCTCGCTCGT GAACTCCCAG 
CTCTCGCAGC GCGGCAATCC GGAGCCGAAC CGCCTGGTGA CCGCCTTCTG GGTGCTGTGC 
ATGTCCGGCA TCGCGGTGGT CATCCTCCTC TTCGGCGGCG AGAACGCCCT CAACGGCCTC 
CAGAACCTCG TGGTGGTCAC CGCGCTGCCC TTCGCGTTCA TCCTCGTGTT GATGGCGGTC 
GCCCTGGTCA AGGAGCTGCG CCACGACCCG ATGGCGATCC GCGACCACTT CCAGGAGGTC 
GCGATCGAGA ACGCGGTCAA GCACGGGGTC GCGGAGTACG GGGACCACTT CGCGCTCGCG 
ATCGAGCCCA CCGCGCCGGA CAGCGAGTAC GCGACCGGTG CCGAGTTCGA CTCCACCGCG 
CCCGAGGTCA CCGAGTGGTA CGCCCGCACC GATGAGGAGG GCAACCCGGT CGAGCACGAC 
TACGAGACCG GCGAGTACCT TACCGCGCCC GAACGGACCG GCGAGGCGGA TGCCGGTGAC 
GAGGCCGGGC CCGGCTCCGG GGACGAGGAG GGGGATTCCG CGCCCGCCTC ACGGATCTGA 

 

Protein sequence

MPGVSVEDQK VRYGIDVPIL VAVGLLIIGF VTWGIIAPQQ VFDVSGAALG WVMQNLGWLF 
NVLAIAMVLL LLVIALSRYG KIPLGLDGEK PEYGTASWAA MLFAAGIGIG IIFFGPYEPL 
TYYLAPRPGA PYDAGSMNAM KGAIAQSALH WGVNAWAIYA IVGLSAAYIS YRRGRVPLMS 
AIVSGLWGGN SSSIPSRIID ALAIIATLFG TAASLGIGAL QIARGVEIVS GIGPTGNTIA 
MVIITVLTIG TIASAVSGVA RGIRWLSNIN MVLSVGLALF FFVVGPTVFL VNIIPGAITE 
YFGTLPDMLG ANMAEGEDMQ AFLSSWTTFY WAWWVSWAPF VGVFTAKISR GRTIRQFVLG 
VLLIPSSIIV LAFAVLGGTA IWLQRRASEL DEFGNTLAVA DPGSAIAPDG TVDSLPLPAE 
IFYTVVEQLP GGAVISALVI VVLAIFFITT ADSASLVNSQ LSQRGNPEPN RLVTAFWVLC 
MSGIAVVILL FGGENALNGL QNLVVVTALP FAFILVLMAV ALVKELRHDP MAIRDHFQEV 
AIENAVKHGV AEYGDHFALA IEPTAPDSEY ATGAEFDSTA PEVTEWYART DEEGNPVEHD 
YETGEYLTAP ERTGEADAGD EAGPGSGDEE GDSAPASRI