Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bfae_03620 |
Symbol | rumB |
ID | 8398910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Brachybacterium faecium DSM 4810 |
Kingdom | Bacteria |
Replicon accession | NC_013172 |
Strand | - |
Start bp | 417634 |
End bp | 418800 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 644996452 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | YP_003153827 |
Protein GI | 257067572 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGGTGCC ACCACTTCGA CTCCGGCGCG TGCAGGTCCT GCACGCTGCT GGACCTCCCC CGCCCGCAGC AGCTCGCCGA GGGCCGGGAA CGGGTCGAAT CGCTGCTGGC TCCGTTCTTC GCACCCGGCA CCCGGTGGGG GCCGCCGCTG CTCGGCCCCG AGGCCGGGTT CCGCGCCCGC GGCAAGATGG CCGTCGGAGG CACCGCCGCC GCCCCGGTGC TGACGCTGCC CGGTCAGGCC GCCGGCACCG ACCTGTGCGA CTGCCCCCTG TACCCCGCCG GGGTCGAGGA GGTGCTCGAG GGGGCGAAGG CCCTGATCCG CCGCGCCCAG GTCCCGCCCT ACGACGTCGC CCGACGCCGC GGGGAGATCA AGAACGTGCT GGTCACCGCG TCACCGGACG GGCAGCATCT GCTGCGCCTG GTGCTGCGCA GCGAGCGGGC GCTGGGCCGC CTCCGCGAGC ACCTGCCGCG GCTGCTCGCG GCGCACCCCT CGCTCATCGC GGTGAGCGCG AACATCCACC CCGCGCACAC CACCGCCGTC GAGGGCGCGC AGGAGATCCA CCTCGCGGGC GCCGCCACGA TCCCGGTGCG CACCGGGGAC GTCACCCTGT TCGCCCGCCC GCAGTCCTTC CTCCAGACCA ACACCGCCGT CGCCGCCCAG CTGTACCGGC AGGGGGCGGC CTGGGCCCGT GAGATCCTCG CGCAGCCCGG CGCCGAGGGG GCACCGCGCG TATGGGACCT CTACTGCGGC CTCGGCGGCT TCGCGCTCCA CGTCGCGCGC GCCGTGCCCG GCGCCCGCGT CACCGGCGTC GAAGTCTCCC CCCAGGCCAT CGACGGGGCC CGCGAGGCGG CGGAGGCGGC CGGGCTCCGC TCCGCGACCT TCCTCGCCGC CGACGCCACC CGCTGGGCGG CCACGGAGGC CGCGGGGCCG AAGGGACCGC CGGATCTCGC CGTGGTGAAC CCGCCCCGCC GCGGGCTGGG CCCCGAGCTC GCCGGCTGGC TCGAGCGCTC CGGCGTGGCC GACGTGCTGT ACTCGAGCTG CAACCCGGCG ACCCTGGCCA CGGACCTCGC GGCCATGCCC TCGCTGCAGA TCACCGCCGG ACGCTACGTC GACATGTTCC CGCACACCGC GCACGCCGAG GTCATCGTGC GCCTGCGCCG CACCTGA
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Protein sequence | MRCHHFDSGA CRSCTLLDLP RPQQLAEGRE RVESLLAPFF APGTRWGPPL LGPEAGFRAR GKMAVGGTAA APVLTLPGQA AGTDLCDCPL YPAGVEEVLE GAKALIRRAQ VPPYDVARRR GEIKNVLVTA SPDGQHLLRL VLRSERALGR LREHLPRLLA AHPSLIAVSA NIHPAHTTAV EGAQEIHLAG AATIPVRTGD VTLFARPQSF LQTNTAVAAQ LYRQGAAWAR EILAQPGAEG APRVWDLYCG LGGFALHVAR AVPGARVTGV EVSPQAIDGA REAAEAAGLR SATFLAADAT RWAATEAAGP KGPPDLAVVN PPRRGLGPEL AGWLERSGVA DVLYSSCNPA TLATDLAAMP SLQITAGRYV DMFPHTAHAE VIVRLRRT
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