| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1407 |
|---|
| Symbol | |
|---|
| ID | 8398217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1512517 |
|---|
| End bp | 1514487 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644995772 |
|---|
| Product | excinuclease ABC, B subunit |
|---|
| Protein accession | YP_003153151 |
|---|
| Protein GI | 257066895 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA ATTTAAAATC GGATTATAAA CCTAGAGGCG ATCAGCCTTA TGCTATAGAT
AAATTATCAA AGGGAATCGA GGCGGGAGAC CATCATCAGA TTCTCCGTGG TGTAACAGGT
TCTGGTAAGA CCTTTACCAT GGCTAATATT ATCCAAAATG TCCAAAGACC TACCCTAGTT
CTTGCCCACA ACAAGACTTT GGCCTACCAG CTTTTTACGG AGTTTAAGGA ATTTTTCCCG
GACAATGCTG TCGAGTATTT CGTTTCCTAC TATGATTATT ACCAACCAGA AGCCTATGTG
GCTGCTACAG ATACATATAT TGCCAAGGAC TCTTCTATTA ATGACGAGAT AGACAAGATG
AGGCACTCTG CGACCATGGC TCTTTTTGAG AGGCGTGATG TTATAATTGT GGCTAGTGTT
TCTTGTATTT ACGGCTTGGG AGATCCTATC GAGTATCAAA AGCTTGTAGT ATCCCTCCGT
CCAGGTCAGG AGATTAGCCC GGAAGATGTT ATGAGAAAGC TAATTGATGT CCAATATGTG
AGAAATGATG TGGAGTTTAG CCGAGGGACT TTCAGACGTA GGGGAGATAT CTTAGATGTT
TTCCCAGCAG GTTTTGACCA AAAGGCTATT AGATTTGAGT TTTTCGGAGA TGAAATCGAC
GAGATTTCGG AGTTTGATTC ATTGACAGGT AAGGTTACTG CAAGGATTAG CCACGCTTAT
ATTTATCCTG CCAGCCACTA TGCGACATCA AGTGAGAAGA CAGAAAAGGC CATCATTACT
ATAGAAGAAG AACTTGAGGA AAGATTGGCC GAGCTTAATT CGGAAAATAA GCTCCTTGAA
GCCCAAAGGC TCGAGCAAAG GACCAAATAC GATATAGAGA TGCTCAGGGA GATTGGTTTC
TGTTCTGGAA TTGAGAATTA CTCTAGACAC TTAAGCCAGA GACCAGCAGG GTCTAGGCCT
TATACCCTAA TCGACTATTT TCCAGAAGAC TTCGTCCTAA TGGTGGACGA GTCCCACGTT
TCTATTCCCC AGGTTGGAGG AATGTATGAG GGAGATAGGT CCCGTAAGCA AAACTTGGTT
GACTACGGCT TTAGGCTTCC TTCTGCCCTA GATAACAGGC CGCTTAAGTT CGACGAGTTC
GAGAAACTAA TCAACCAGGC AGTTTATGTT TCAGCAACTC CAGGCCCTTA TGAGAAGGAG
AAAACCCATG GCAAGATGGT CGATCAAATC ATAAGACCAA CTGGGCTTTT AGATCCATTG
ATAGAGGTAA GGCCAACAGC AAATCAGATA GACGACCTCA TAGAAGAAGT CCATGCGACC
ATTGCCAAGA AGGAAAGGGT ACTCGTTACT ACTCTTACCA AGAAGATGGC AGAAGACCTT
ACGACCTTCC TTACGGAAAA TGGAATCAAG GTAAGATACC TTCACTCAGA TATTAAAACT
ATAGAGAGAA GTGAGATTAT TAGAGAGCTC CGTCTAGGAG AGTTTGATGT TCTTGTAGGA
ATCAACCTCC TCCGTGAGGG ACTCGATATA CCAGAAGTTT CACTTATAAC AATCCTCGAT
GCTGACAAGG AAGGCTTCCT CCGCTCTGAA ACTTCCCTTA TCCAGACTAT CGGAAGGGCA
GCGAGAAACT CCGAGGGTAG GGTAATCATG TATGCCGATA CCATAACTGG ATCTATGAGA
AGGGCGATTG ATGAGACAGA ACGCCGTAGG ACCATACAAG AAGAATTTAA TGAAAAGCAC
GGCATAGTGC CAACTACAAT CAAGAAAAAT ATAGCTGAAA TCATCCAAAT CACCAAGAAG
AAGGAAGAAG AGGAGATTGA AGAATTCAGC AAAGACGATA TAGAAACAAT ACTAATTAAT
CTGGAGGCTG AGATGTATAA GGCAGCAGAG GAGCTTGACT TCGAGCGTGC CGCAGCCCTC
CGTGATCAGA TTAAGTCTAT GAAAGATAAT TTTACAGGAG TGATTAATTG A
|
|---|
| Protein sequence | MKFNLKSDYK PRGDQPYAID KLSKGIEAGD HHQILRGVTG SGKTFTMANI IQNVQRPTLV
LAHNKTLAYQ LFTEFKEFFP DNAVEYFVSY YDYYQPEAYV AATDTYIAKD SSINDEIDKM
RHSATMALFE RRDVIIVASV SCIYGLGDPI EYQKLVVSLR PGQEISPEDV MRKLIDVQYV
RNDVEFSRGT FRRRGDILDV FPAGFDQKAI RFEFFGDEID EISEFDSLTG KVTARISHAY
IYPASHYATS SEKTEKAIIT IEEELEERLA ELNSENKLLE AQRLEQRTKY DIEMLREIGF
CSGIENYSRH LSQRPAGSRP YTLIDYFPED FVLMVDESHV SIPQVGGMYE GDRSRKQNLV
DYGFRLPSAL DNRPLKFDEF EKLINQAVYV SATPGPYEKE KTHGKMVDQI IRPTGLLDPL
IEVRPTANQI DDLIEEVHAT IAKKERVLVT TLTKKMAEDL TTFLTENGIK VRYLHSDIKT
IERSEIIREL RLGEFDVLVG INLLREGLDI PEVSLITILD ADKEGFLRSE TSLIQTIGRA
ARNSEGRVIM YADTITGSMR RAIDETERRR TIQEEFNEKH GIVPTTIKKN IAEIIQITKK
KEEEEIEEFS KDDIETILIN LEAEMYKAAE ELDFERAAAL RDQIKSMKDN FTGVIN
|
|---|
| |